View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13171_high_10 (Length: 228)
Name: NF13171_high_10
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 4064769 - 4064969
Alignment:
| Q |
9 |
gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaactaaagatctatca |
108 |
Q |
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| T |
4064769 |
gacatcatcacacttattggcttcatggtaagagcgatgcaccactacctctc----caagtcaagcaatcgaagaatcttcacaactaaagatctatca |
4064864 |
T |
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| Q |
109 |
atcaggcttccattctcactagaaacctttagagaatccacattcaatttaattgctctaaatcctaacctttctcgcatacttcaaaccttcaaatact |
208 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4064865 |
atcaggctttcattctcactagaaacctttagagaatccacattcaatttaattgctctaaatcctaacc-ttctcgcatacttcaaaccttcaaatact |
4064963 |
T |
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| Q |
209 |
ccacaa |
214 |
Q |
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|||||| |
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| T |
4064964 |
ccacaa |
4064969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 2992904 - 2992816
Alignment:
| Q |
9 |
gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaacta |
97 |
Q |
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| T |
2992904 |
gacatcagcacattgattggcttcatggtaagagtgatgcatcactacctcccattccaagtcaaacaatggacaaatcttcacaacta |
2992816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 18359289 - 18359201
Alignment:
| Q |
9 |
gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaacta |
97 |
Q |
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| T |
18359289 |
gacatcagcacattgattggcttcatggtaagagtgatgcatcactacctcccattccaagtcaaacaatggacaaatcttcacaacta |
18359201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 2613816 - 2613720
Alignment:
| Q |
30 |
ttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaactaaagatctatcaatcaggcttccattctca |
126 |
Q |
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||||||||||||| ||| | || | |||| ||||||||| |||| ||||||| ||||||||| ||||||||||||| ||| || |||||||||||| |
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| T |
2613816 |
ttcatggtaagagtgattcaccgcaacctttcactccaactcaaacaatcgatgaatcttcataactaaagatctacaaattagacttccattctca |
2613720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 24184639 - 24184702
Alignment:
| Q |
140 |
gagaatccacattcaatttaattgctctaaatcctaacctttctcgcatacttcaaaccttcaaa |
204 |
Q |
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|||||||||||||||||| | |||| | ||||| |||||| || |||||||||||||||||||| |
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| T |
24184639 |
gagaatccacattcaattcatctgctttgaatccgaacctt-cttgcatacttcaaaccttcaaa |
24184702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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