View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13171_high_5 (Length: 359)

Name: NF13171_high_5
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13171_high_5
NF13171_high_5
[»] chr7 (5 HSPs)
chr7 (220-359)||(39110714-39110853)
chr7 (5-124)||(39110949-39111068)
chr7 (27-110)||(28030975-28031057)
chr7 (27-86)||(32525253-32525312)
chr7 (21-124)||(40417858-40417963)
[»] chr8 (7 HSPs)
chr8 (32-122)||(14707236-14707328)
chr8 (27-124)||(39856122-39856221)
chr8 (28-110)||(7535778-7535861)
chr8 (26-121)||(12734898-12734995)
chr8 (26-121)||(38958438-38958535)
chr8 (31-79)||(25018499-25018547)
chr8 (27-110)||(32752503-32752587)
[»] chr4 (9 HSPs)
chr4 (27-124)||(39654908-39655007)
chr4 (80-123)||(35897786-35897830)
chr4 (27-124)||(42853661-42853760)
chr4 (27-124)||(50831643-50831742)
chr4 (32-105)||(17475981-17476054)
chr4 (29-124)||(21775232-21775329)
chr4 (27-124)||(41849775-41849874)
chr4 (33-77)||(40587101-40587144)
chr4 (32-92)||(52846122-52846182)
[»] chr5 (3 HSPs)
chr5 (28-124)||(6596415-6596512)
chr5 (27-121)||(21943584-21943679)
chr5 (31-124)||(35649881-35649974)
[»] chr1 (5 HSPs)
chr1 (25-123)||(51571232-51571332)
chr1 (35-123)||(25509075-25509165)
chr1 (56-124)||(47721493-47721563)
chr1 (56-124)||(47728485-47728555)
chr1 (32-92)||(50882003-50882063)
[»] chr6 (6 HSPs)
chr6 (27-124)||(4820451-4820550)
chr6 (27-124)||(31883191-31883290)
chr6 (30-124)||(6271434-6271527)
chr6 (32-105)||(3199064-3199137)
chr6 (32-92)||(335179-335239)
chr6 (32-92)||(31749483-31749543)
[»] chr3 (14 HSPs)
chr3 (27-124)||(55361121-55361220)
chr3 (28-114)||(30185619-30185707)
chr3 (27-73)||(4844869-4844915)
chr3 (27-73)||(4859424-4859470)
chr3 (27-73)||(4870565-4870611)
chr3 (27-73)||(4879432-4879478)
chr3 (27-92)||(48176737-48176803)
chr3 (35-92)||(26645144-26645201)
chr3 (28-92)||(34627770-34627835)
chr3 (32-105)||(35201433-35201506)
chr3 (29-124)||(35299764-35299861)
chr3 (32-92)||(3953368-3953428)
chr3 (31-121)||(12762581-12762673)
chr3 (32-92)||(21196242-21196302)
[»] chr2 (5 HSPs)
chr2 (27-124)||(44977387-44977486)
chr2 (26-121)||(39147853-39147950)
chr2 (57-92)||(4023268-4023303)
chr2 (27-124)||(27490618-27490717)
chr2 (26-79)||(30339751-30339804)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 220 - 359
Target Start/End: Complemental strand, 39110853 - 39110714
Alignment:
Q  220 ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaatttcattgctagttagtctcgcataataaactttgac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39110853 ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaattccattgctagttagtctcgcataataaactttgac 39110754  T
Q  320 acatttacatgaaactttattttgttaacaccagcaatac 359  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39110753 acatttacatgaaactttattttgttaacaccagcaatac 39110714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 39111068 - 39110949
Alignment:
Q  5 aatgccaacttatatatattttgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgac 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  39111068 aatgccaacttgtatatattttgagttgtgttatttgaacaattattttaatgacaacttatgagacaatcataatttacaatgaaaatgaagtattgac 39110969  T
Q  105 aaaaaatcaaagcaatagag 124  Q
    ||||||||||||||||||||    
T  39110968 aaaaaatcaaagcaatagag 39110949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 28031057 - 28030975
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgacaaaaaa 110  Q
    ||||||| |||||||||||| ||||| || || ||||| || |||||||||||||||||| ||||| || ||||| ||| ||||    
T  28031057 gagttgttttatttgaacaactatttgaatgataattt-tgggacaatcataatttacaaagaaaatgaggtattaacacaaaa 28030975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 32525312 - 32525253
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaa 86  Q
    ||||||||||||||| | |||||||| || |||||||||||||||||   ||||||||||    
T  32525312 gagttgtgttatttggataattatttcaatgacaatttatgagacaactgtaatttacaa 32525253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 40417963 - 40417858
Alignment:
Q  21 tattttgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagca 118  Q
    |||| ||||||||||||||||||||  |||||  | ||||| || |||||||| || || ||||||| ||||  || ||||||||| ||||| |||||||    
T  40417963 tattatgagttgtgttatttgaacatctatttatacgacaacttttgagacaaccaaaattttacaaagaaagtgaggtattgacataaaaaccaaagca 40417864  T
Q  119 atagag 124  Q
    ||||||    
T  40417863 atagag 40417858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 14707236 - 14707328
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacg-aagtattgacaa-aaaatcaaagcaatag 122  Q
    ||||||||||||||| |||||   |||||| |||||||||||||||||||||||| ||||| | | |||||||||| ||||||||||||||||    
T  14707236 gtgttatttgaacaactatttggtggacaacttatgagacaatcataatttacaaagaaaaagtaggtattgacaagaaaatcaaagcaatag 14707328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 39856221 - 39856122
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||||| |||||||| || || || | |||||||||| |||| |||| |||||  |  |||||||| |||||||||||||||||||    
T  39856221 gagttgtgttatttgaacaactattttaatgataacttttaagacaatcatgaattaacaaagaaaaatagatattgacacaaaaatcaaagcaatagag 39856122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 7535861 - 7535778
Alignment:
Q  28 agttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgacaaaaaa 110  Q
    ||||||||||||| || ||| |||| || ||||||||||| ||||||||| ||||||||| ||||| || ||||| ||| ||||    
T  7535861 agttgtgttatttaaataataatttgaatgacaatttatgggacaatcataaatttacaaagaaaatgaggtattaacacaaaa 7535778  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 12734898 - 12734995
Alignment:
Q  26 tgagttgtgttatttgaacaattattttaaggacaatttatgagacaa-tcataatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaata 121  Q
    |||| ||||||||||||||||| ||||  | || |||||||| ||||| | | |||||||||||||||  | ||||||||| ||||||||||| ||||    
T  12734898 tgagatgtgttatttgaacaataatttgtatgataatttatgtgacaactaaaaatttacaatgaaaagtaggtattgacacaaaaatcaaagtaata 12734995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 38958438 - 38958535
Alignment:
Q  26 tgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaata 121  Q
    ||||| |||||||||||||||| ||||||| |||||||| ||  |||| ||| ||||||||| ||||| || ||||  ||| ||||| ||||||||||    
T  38958438 tgagtcgtgttatttgaacaatcattttaatgacaatttttggaacaaccatcaatttacaaagaaaatgaggtatgaacacaaaaaccaaagcaata 38958535  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 25018547 - 25018499
Alignment:
Q  31 tgtgttatttgaacaattattttaaggacaatttatgagacaatcataa 79  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  25018547 tgtgttatttgaacaattatttgtaagacaatttatatgacaatcataa 25018499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 32752587 - 32752503
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatca-taatttacaatgaaaacgaagtattgacaaaaaa 110  Q
    ||||||||||||||||||||  |||| || || |||||||| |||||||| | |||||||| ||||| || | ||||||| ||||    
T  32752587 gagttgtgttatttgaacaaccatttcaatgataatttatgggacaatcattgatttacaaagaaaatgaggaattgacacaaaa 32752503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 39655007 - 39654908
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||||| |||||  | || ||||| | |||||| ||| ||||||||| ||||| || ||||||||| |||||||||||||||||||    
T  39655007 gagttgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaatgaggtattgacacaaaaatcaaagcaatagag 39654908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 35897830 - 35897786
Alignment:
Q  80 tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaataga 123  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  35897830 tttacaatgaaaatgaagtattgacacaaaaatcaaagcaataga 35897786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 42853760 - 42853661
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||||   |||| |  |||||||| ||||||||||| || |||| || ||||| || ||||||||| ||||| |||||||||||||    
T  42853760 gagttgtgttatttgaacatccatttgagtgacaatttttgagacaatcaaaattttataaagaaaatgaggtattgacacaaaaaccaaagcaatagag 42853661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 50831643 - 50831742
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||||||||||||||||  |||| |  ||||| || || ||||| ||||| ||||||| ||||| || || |||||| |||||||||||||||||||    
T  50831643 gagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaatagag 50831742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 17476054 - 17475981
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca 105  Q
    |||||||||||||||| | |||   ||||| ||||  |||||||||||||||||| ||||| | ||||||||||    
T  17476054 gtgttatttgaacaatcaatttggtgacaacttatttgacaatcataatttacaaagaaaaagtagtattgaca 17475981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 21775232 - 21775329
Alignment:
Q  29 gttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||||||| ||| ||||||||  | |||||||| || ||||||||| |||||| || ||||| ||| |||||||| | ||| |||||||||||||    
T  21775232 gttgtgttattagaataattatttggatgacaatttttgtgacaatcataaatttataaggaaaatgaaatattgacacagaaaccaaagcaatagag 21775329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 41849874 - 41849775
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca--aaaaatcaaagcaataga 123  Q
    ||||||||| ||||||||||  ||||||| |||||||| |   |||||||||| ||||||| ||||| ||| ||||||||  ||||| ||||||||||||    
T  41849874 gagttgtgtgatttgaacaaccattttaatgacaattttttt-acaatcataaatttacaaagaaaaagaaatattgacacaaaaaaccaaagcaataga 41849776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 40587144 - 40587101
Alignment:
Q  33 tgttatttgaacaattattttaaggacaatttatgagacaatcat 77  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||    
T  40587144 tgttatttgaacaatcattttaa-gacaacttatgagacaatcat 40587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 52846122 - 52846182
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    ||||||||||||||| ||||| |  |||||||| |  |||||||||||||||||| |||||    
T  52846122 gtgttatttgaacaactatttgattgacaatttttaggacaatcataatttacaaagaaaa 52846182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 6596512 - 6596415
Alignment:
Q  28 agttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||||||||||||| |  |||| ||  |||||||||| || ||||||||||||||| ||||| || ||||| ||| ||||| |||||||||||||    
T  6596512 agttgtgttatttgaacgaccatttcaattacaatttatgggataatcataatttacaaagaaaatgaggtattaacacaaaaaccaaagcaatagag 6596415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 21943584 - 21943679
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaata 121  Q
    |||||||||||||| ||||| |||||||| ||||| |||   ||||| |||||||||||| |||||  |  |||||||| ||||||||||||||||    
T  21943584 gagttgtgttatttaaacaactattttaatgacaacttacatgacaaccataatttacaaagaaaataagatattgacagaaaaatcaaagcaata 21943679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 35649881 - 35649974
Alignment:
Q  31 tgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgacaaaaaatcaaagcaatagag 124  Q
    ||||||||||||||||| |||| || |||||||||||  ||| |||||||||| || | |||  |  |||||||| ||||| || |||||||||    
T  35649881 tgtgttatttgaacaatcatttcaatgacaatttatggaacagtcataatttataaaggaaataagatattgacacaaaattaatgcaatagag 35649974  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 51571232 - 51571332
Alignment:
Q  25 ttgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatag 122  Q
    ||||||||||||||||||||||  |||| |  |||||||| || ||||| ||||| ||||||| ||||| || ||||||||| ||||| |||||||||||    
T  51571232 ttgagttgtgttatttgaacaaccatttgattgacaatttttgggacaaccataattttacaaagaaaaagaggtattgacacaaaaaccaaagcaatag 51571331  T
Q  123 a 123  Q
    |    
T  51571332 a 51571332  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 25509075 - 25509165
Alignment:
Q  35 ttatttgaacaattattttaaggacaatttatgagacaatca-taatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaataga 123  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||| | || ||||| ||||| || ||||||||| ||||| |||| |||||||    
T  25509075 ttatttgaacaatcattttaatgacaacttattagacaatcattgatatacaaagaaaatgaggtattgacacaaaaaccaaaacaataga 25509165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 47721563 - 47721493
Alignment:
Q  56 ggacaatttatgagacaatcataatttacaatgaaaacg-aagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||| ||||| ||||| |||||||||||| ||||| | |||||||||||  ||||||||||||||||||    
T  47721563 ggacaacttatgggacaaccataatttacaaagaaaaagtaagtattgacacgaaaatcaaagcaatagag 47721493  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 47728555 - 47728485
Alignment:
Q  56 ggacaatttatgagacaatcataatttacaatgaaaacg-aagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||| ||||| ||||| |||||||||||| ||||| | |||||||||||  ||||||||||||||||||    
T  47728555 ggacaacttatgggacaaccataatttacaaagaaaaagtaagtattgacacgaaaatcaaagcaatagag 47728485  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 50882003 - 50882063
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||  |||| |  ||||||||||| ||||||||||||||| || |||||    
T  50882003 gtgttatttgaacaaccatttgattgacaatttatgtgacaatcataatttataaagaaaa 50882063  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 4820550 - 4820451
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||||| |||||  | || || || ||||||||||| || ||||||| ||||| || | ||||||| |||||||||||||||||||    
T  4820550 gagttgtgttatttgaacaactatttacatgataacttttgagacaatcaaaattttacaaagaaaatgaggcattgacacaaaaatcaaagcaatagag 4820451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 31883191 - 31883290
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||| |||||||||||| ||||| |  |||||||| || ||||| ||||| ||||||| ||||| || || |||||| |||||||||||||||||||    
T  31883191 gagttgtattatttgaacaactatttgattgacaatttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaatagag 31883290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 6271527 - 6271434
Alignment:
Q  30 ttgtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||  ||||||| ||||| || ||| || |||||||||||||| ||||| ||  |||||||| ||||| |||| ||||||||    
T  6271527 ttgtgttatttgaacaaccattttaatgacaacttttgatacgatcataatttacaaagaaaaaga--tattgacacaaaaaccaaaacaatagag 6271434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 3199137 - 3199064
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca 105  Q
    ||||||||||||||| || ||| | || |||||||  ||||||||||||||| || ||||| | ||||||||||    
T  3199137 gtgttatttgaacaactaatttgatgataatttatttgacaatcataatttataaagaaaaagtagtattgaca 3199064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 335239 - 335179
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||| | ||||  ||||| ||||  |||||||||||||||||| |||||    
T  335239 gtgttatttgaacaatcaatttagtgacaacttatttgacaatcataatttacaaagaaaa 335179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 31749543 - 31749483
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||| |||| |  ||||| ||| ||||||| |||||||||||| |||||    
T  31749543 gtgttatttgaacaatcatttgattgacaacttaagagacaaccataatttacaaagaaaa 31749483  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 55361121 - 55361220
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcata-atttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||| |||||||||||| ||||| || || || ||||| ||||| |||  |||||||| ||||| |||||||||||| ||||| |||||||||||||    
T  55361121 gagttgttttatttgaacaactatttgaatgaaaacttatgtgacaaccattgatttacaaagaaaatgaagtattgacacaaaaaccaaagcaatagag 55361220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 30185707 - 30185619
Alignment:
Q  28 agttgtgttatttgaacaattattttaaggacaatttatgagacaatca-taatttacaatgaaaacgaagtattgaca-aaaaatcaa 114  Q
    |||||||||||||||||||  |||| || |||||||||||||||||| | | |||||||| ||||| || | ||||||| |||||||||    
T  30185707 agttgtgttatttgaacaaccatttcaaagacaatttatgagacaattattgatttacaaagaaaatgaggaattgacacaaaaatcaa 30185619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4844915 - 4844869
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaa 73  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||||    
T  4844915 gagttgtgttatttgaacaacaattttaacgataatttatgagacaa 4844869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4859470 - 4859424
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaa 73  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||||    
T  4859470 gagttgtgttatttgaacaacaattttaacgataatttatgagacaa 4859424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4870611 - 4870565
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaa 73  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||||    
T  4870611 gagttgtgttatttgaacaacaattttaacgataatttatgagacaa 4870565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4879478 - 4879432
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaa 73  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||||    
T  4879478 gagttgtgttatttgaacaacaattttaacgataatttatgagacaa 4879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 48176737 - 48176803
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaa 92  Q
    ||||||||||||||||||||||||||  |  | |||||||| ||||||||| |||||||||| ||||    
T  48176737 gagttgtgttatttgaacaattatttggataataatttatgcgacaatcataaatttacaataaaaa 48176803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 26645201 - 26645144
Alignment:
Q  35 ttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||| |||||  | ||||||||||| || ||||||||||||||| |||||    
T  26645201 ttatttgaacaactatttggatgacaatttatgggataatcataatttacaaagaaaa 26645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 34627770 - 34627835
Alignment:
Q  28 agttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaa 92  Q
    |||||||||||||||||||||||||| | || || |||| |||||| ||| ||||||||| |||||    
T  34627770 agttgtgttatttgaacaattatttttatgataacttataagacaaccataaatttacaaagaaaa 34627835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35201433 - 35201506
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaacgaagtattgaca 105  Q
    |||||||||||||||| | |||   ||||| ||||  |||||||||||||||||| ||||| | ||||||||||    
T  35201433 gtgttatttgaacaatcaatttggtgacaacttatttgacaatcataatttacaaagaaaaagtagtattgaca 35201506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 35299764 - 35299861
Alignment:
Q  29 gttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||| |||||  ||||||| |||||||| |  |||||  || |||||| || ||||| || ||||||||| |||||||||||||||||||    
T  35299764 gttgtgttatttcaacaagcattttaatgacaatttttaggacaacaatgaatttataaagaaaatgaggtattgacacaaaaatcaaagcaatagag 35299861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 3953368 - 3953428
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||| ||||    |||||||| |||||||||||||||||| || |||||    
T  3953368 gtgttatttgaacaatcatttggttgacaatttttgagacaatcataatttataaagaaaa 3953428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 12762581 - 12762673
Alignment:
Q  31 tgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaata 121  Q
    ||||||||||||||||| ||||  | ||||||||||| ||||| ||| ||||||||| |||||  |  |||||||| ||||||||||| ||||    
T  12762581 tgtgttatttgaacaatcatttacatgacaatttatgggacaaccataaatttacaaagaaaaatagttattgacacaaaaatcaaagtaata 12762673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 21196302 - 21196242
Alignment:
Q  32 gtgttatttgaacaattattttaaggacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||  |||| |  ||||||||||| || ||||||||||||||| |||||    
T  21196302 gtgttatttgaacaaccatttgattgacaatttatgggataatcataatttacaaagaaaa 21196242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 44977387 - 44977486
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    ||||||||||||||||||||  |||| || || || ||||||||||| ||| ||||||||| ||||| |  ||||||||| ||||| |||||||||||||    
T  44977387 gagttgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaaaatggggtattgacacaaaaaccaaagcaatagag 44977486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 39147950 - 39147853
Alignment:
Q  26 tgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcat-aatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaata 121  Q
    |||| ||||||||||||||||  ||||||| ||||| || || ||||||||| |||||||||  |||| || ||||||||| |||||||||| |||||    
T  39147950 tgagatgtgttatttgaacaaccattttaatgacaacttttgggacaatcataaatttacaaaaaaaatgaggtattgacacaaaaatcaaaacaata 39147853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 4023268 - 4023303
Alignment:
Q  57 gacaatttatgagacaatcataatttacaatgaaaa 92  Q
    |||||||||||||||||||||||||||||| |||||    
T  4023268 gacaatttatgagacaatcataatttacaaagaaaa 4023303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 27490618 - 27490717
Alignment:
Q  27 gagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa-tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag 124  Q
    |||||||||||||||||||   ||||| | ||||| || || |||||||| || ||||||| ||||| || ||||| ||| |||||||||||||||||||    
T  27490618 gagttgtgttatttgaacatccattttgatgacaacttttgtgacaatcaaaattttacaaagaaaatgatgtattaacacaaaaatcaaagcaatagag 27490717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 30339751 - 30339804
Alignment:
Q  26 tgagttgtgttatttgaacaattattttaaggacaatttatgagacaatcataa 79  Q
    |||||||||||||||||||||  |||| || || || |||||||||||||||||    
T  30339751 tgagttgtgttatttgaacaaccatttaaatgagaacttatgagacaatcataa 30339804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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