View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13171_low_10 (Length: 240)
Name: NF13171_low_10
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 44881709 - 44881505
Alignment:
| Q |
18 |
gaagaataggaaggcaaattagaattgcatattttccaagttcataatggtaagcaaaattttgatactgataagcacaattctgataatggtaagcaaa |
117 |
Q |
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| T |
44881709 |
gaagaataggaaggcaaattagaattgcatattttccaagttcataatggtaagcaaaaatttgatact-ataagcacaattctgataatggtaagcaaa |
44881611 |
T |
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| Q |
118 |
tacaatgatgatgttagagaatttcataagatccaattagattaaataaagttaactagaacttatggggagatgaatgagaaatttttatctgcatcac |
217 |
Q |
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| T |
44881610 |
tacaatgatgatgttagagaatttcataagatccaattagattaaataaagttaactagaacttatggggagatgaatgagaaatttttatctgcatcac |
44881511 |
T |
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| Q |
218 |
aagagt |
223 |
Q |
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|||||| |
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| T |
44881510 |
aagagt |
44881505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 44878341 - 44878417
Alignment:
| Q |
147 |
gatccaattagattaaataaagttaactagaacttatggggagatgaatgagaaatttttatctgcatcacaagagt |
223 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878341 |
gatccaactagagtaaataaagttaactagaacttatggggagatgaatgagaaatttttatctgcatcacaagagt |
44878417 |
T |
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