View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13171_low_2 (Length: 538)

Name: NF13171_low_2
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13171_low_2
NF13171_low_2
[»] chr1 (3 HSPs)
chr1 (15-297)||(27682115-27682397)
chr1 (323-523)||(27681895-27682088)
chr1 (212-297)||(335355-335440)
[»] chr4 (2 HSPs)
chr4 (203-297)||(9984189-9984283)
chr4 (212-297)||(15605234-15605322)
[»] chr8 (1 HSPs)
chr8 (204-297)||(37695243-37695336)
[»] chr7 (3 HSPs)
chr7 (212-297)||(26962829-26962914)
chr7 (212-297)||(30805933-30806026)
chr7 (212-297)||(30807292-30807385)
[»] chr3 (4 HSPs)
chr3 (204-297)||(33779840-33779933)
chr3 (211-297)||(33769269-33769357)
chr3 (209-297)||(39465436-39465529)
chr3 (212-297)||(37830950-37831044)
[»] chr2 (3 HSPs)
chr2 (209-297)||(37605304-37605394)
chr2 (203-252)||(4245397-4245446)
chr2 (212-252)||(27544458-27544498)
[»] chr5 (1 HSPs)
chr5 (209-297)||(26577027-26577123)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 27682397 - 27682115
Alignment:
Q  15 tatgaataactggttgcaacaaaatagcaaaaagaagcaacctcaacggatcaccttattacaatttagtggctgacattatatatttatccccgaaata 114  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  27682397 tatgaataataggttgcaacaaaatagcaaaaagaagcaacctcaacggatcaccttattacactttagtggctgacataatatatttatccccgaaata 27682298  T
Q  115 aaaataacaatattgtaaatgaaccataattagtaacaaaatgttgtgaaagactcccttgttatatttatcatgtgtatgagaaactaatcagcaaccg 214  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  27682297 aaaataacaatattgtaaatgaaccataactagtaagaaaatgttgtgaaagactcctttgttatatttatcatgtgtatgagagattaatcagcaaccg 27682198  T
Q  215 accttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  27682197 accttagctcagttggtagagcggaggactgtagttggtcaacagacatccttaggtcactggttcgaatccggtaggtcgga 27682115  T

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Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 323 - 523
Target Start/End: Complemental strand, 27682088 - 27681895
Alignment:
Q  323 cttgggccaaactcaaaacgacataaaaatcctgcgttttgattcaaaattacaacatcatcgtttcgctcgacgcaactgaatcaaccttcttcatcga 422  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  27682088 cttgggccaaactcaaaacgacataaaaaccctgcgttttgattcaaaattacaacatcatcgtttcgc-------aactgaatcaaccttcttcatcga 27681996  T
Q  423 tttttgcatccattattcatcacaacatggtagaatagtaataatttctttgatctacgattttgtattattcaatttttgaacattaattctgatgaat 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27681995 tttttgcatccattattcatcacaacatggtagaatagtaataatttctttgatctacgattttgtattattcaatttttgaacattaattttgatgaat 27681896  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 335355 - 335440
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||    
T  335355 ccgaccttagctcagttggtagagcggaggactgtagttgtttaacagacatccttaggtcactggttcgaattcggtaggtcgga 335440  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 9984283 - 9984189
Alignment:
Q  203 aatcagcaaccgaccttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  9984283 aatcagaaaccgaccttagctcagttggtagagcggaggactgtagttgttcaacagatatccttaggtcactggttcgaatccggtaggtcgga 9984189  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 15605322 - 15605234
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggttta----cagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |    | |  ||||||||||| ||||||||||||||| ||||||||    
T  15605322 ccgaccttagctcagttggtagagcggaggactgtag-tggttgaacctcgggaatccttaggtcgctggttcgaatccggcaggtcgga 15605234  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 37695243 - 37695336
Alignment:
Q  204 atcagcaaccgaccttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  37695243 atcatcaaccgaccttagctcagatggtagagcggaggactgtagttggttaacagacatccttaggtcactggttcgaatccggtaggtcgga 37695336  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 26962829 - 26962914
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  26962829 ccgaccttagctcagttggtagagcggaggactgtagttggttaacagacatccttaggtcactggttcgaatccggtaggtcgga 26962914  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 30805933 - 30806026
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggt----ttacagat----atccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||    |  || ||    ||||||||||||||||||||||||||||||||||||    
T  30805933 ccgaccttagctcagttggtagagcggaggactgtagttggtaacatgccaaatagccatccttaggtcactggttcgaatccggtaggtcgga 30806026  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 30807292 - 30807385
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggt----ttacagat----atccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||    |  || ||    ||||||||||||||||||||||||||||||||||||    
T  30807292 ccgaccttagctcagttggtagagcggaggactgtagttggtaacatgccaaatagccatccttaggtcactggttcgaatccggtaggtcgga 30807385  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 33779933 - 33779840
Alignment:
Q  204 atcagcaaccgaccttagctcagttggtagagcggaggactgtagttggtttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  33779933 atcagaaaccgaccttagctcagttggtagagcggaggactgtagttggtacgcagatatccttaggtcactggttcgaatccggtaggtcgga 33779840  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 33769357 - 33769269
Alignment:
Q  211 accgaccttagctcagttggtagagcggaggactgtagttggttt--acagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  33769357 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 33769269  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 39465436 - 39465529
Alignment:
Q  209 caaccgaccttagctcagttggtagagcggaggactgtagttggttta-----cagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||     | || ||||||||||||||||||||||||||||||||||||    
T  39465436 caaccgaccttagctcagttggtagagcggaggactgtagttggaataccatgctgaaatccttaggtcactggttcgaatccggtaggtcgga 39465529  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 37830950 - 37831044
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttggt---------ttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||         | | ||  ||||||||||||||||||||||||||||||||||||    
T  37830950 ccgaccttagctcagttggtagagcggaggactgtagttggtataaaagcctaatagccatccttaggtcactggttcgaatccggtaggtcgga 37831044  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 37605394 - 37605304
Alignment:
Q  209 caaccgaccttagctcagttggtagagcggaggactgtagttggtttac--agatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   |  ||||||||||||||||||||||||||||||||||||||||    
T  37605394 caaccgaccttagctcagttggtagagcggaggactgtagtgggtaacctcagatatccttaggtcactggttcgaatccggtaggtcgga 37605304  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 4245397 - 4245446
Alignment:
Q  203 aatcagcaaccgaccttagctcagttggtagagcggaggactgtagttgg 252  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4245397 aatcaacaaccgaccttagctcagttggtagagcggaggactgtagttgg 4245446  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 27544498 - 27544458
Alignment:
Q  212 ccgaccttagctcagttggtagagcggaggactgtagttgg 252  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27544498 ccgaccttagctcagttggtagagtggaggactgtagttgg 27544458  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 26577123 - 26577027
Alignment:
Q  209 caaccgaccttagctcagttggtagagcggaggactgtagttggt--------ttacagatatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        | | ||||||||||||||||||||||||||||||||||||||||    
T  26577123 caaccgaccttagctcagttggtagagcggaggactgtagtgggttaataacctgatagatatccttaggtcactggttcgaatccggtaggtcgga 26577027  T

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