View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13171_low_3 (Length: 430)
Name: NF13171_low_3
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 181 - 412
Target Start/End: Original strand, 49962611 - 49962841
Alignment:
| Q |
181 |
agaaccaagtgcatctaaaaactaatataaagacagagcaattcttatatagtcaaatgaccaaatgtttagtgttaaagacacacacaaaagagccatt |
280 |
Q |
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| T |
49962611 |
agaaccaagtgcatctaaaaactaatataaagacagagcaattcttgtatagtcaaatgaccaaatgtttagtgttaa-gacacacacaaaatagccatt |
49962709 |
T |
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| Q |
281 |
tttctaataattataataaataatagtcttatattttgaagatacgtgtctctttgtgtgcgcgcgcttgcgtactacaagtttgatccctttgattatg |
380 |
Q |
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| T |
49962710 |
tttctaataattataataaataataatcttatattttgaagatacgtgtctctttgtgtgtgagcgcttgcgtactacaagtttgatccctttgattatg |
49962809 |
T |
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| Q |
381 |
tgacattagctagcataaagacatcagcatga |
412 |
Q |
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| T |
49962810 |
tgacattagctagcataaagacatcagcatga |
49962841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 49962498 - 49962541
Alignment:
| Q |
14 |
agatttgaacgataagaattcatattgaaataaaatcatagatt |
57 |
Q |
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| T |
49962498 |
agatttgaatgctaagaattcatattgaaataaaatcatagatt |
49962541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 28915485 - 28915439
Alignment:
| Q |
14 |
agatttgaacgataagaattcatattgaaataaaatcatagatttga |
60 |
Q |
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| T |
28915485 |
agatttgaacaataagaactcatatcgaaataaaatcatagatttga |
28915439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 28955895 - 28955931
Alignment:
| Q |
28 |
agaattcatattgaaataaaatcatagatttgaatct |
64 |
Q |
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| T |
28955895 |
agaactcatattgaaataaaatcatagatttgaatct |
28955931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 43216 - 43266
Alignment:
| Q |
14 |
agatttgaacgataagaattcatattgaaataaaatcatagatttgaatct |
64 |
Q |
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| T |
43216 |
agatttgaacactaagagttcatattaaaataaaatcattgatttgaatct |
43266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 35214158 - 35214121
Alignment:
| Q |
27 |
aagaattcatattgaaataaaatcatagatttgaatct |
64 |
Q |
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| T |
35214158 |
aagagttcatatcgaaataaaatcatagatttgaatct |
35214121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 5025120 - 5025168
Alignment:
| Q |
16 |
atttgaacgataagaattcatattgaaataaaatcatagatttgaatct |
64 |
Q |
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| T |
5025120 |
atttgaacaataagagtttatattgaaataaagttatagatttgaatct |
5025168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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