View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13171_low_5 (Length: 361)
Name: NF13171_low_5
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 29937854 - 29937517
Alignment:
| Q |
10 |
ataatactggtattggagtagta-gttagttgatactaataaaattaagagatgactcttgaccaatgtcaccatggcagaaattaacaagcttctttta |
108 |
Q |
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| T |
29937854 |
ataatactagtattggagtagtaagttagttgatactaataaattgaagagatgactcttgaccaatgtcaccatggcagaaattaacaagcttctttta |
29937755 |
T |
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| Q |
109 |
ttgatttcttcgtccaaataatactatacaataatattctcaacaccttccacaggttggttattatgctactagtactatatat--atattaatgttga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29937754 |
ttgatttcttcgtccaaataatactatacaataatattctcaacaccttccacaggttggttattatgctactagtactatatatatatattaatgttga |
29937655 |
T |
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| Q |
207 |
aatcatatgattccttacttttttaataatagcttttctttcagtttccctggcagcaacaagaaaaacaaacactcaaattatcttaatgtcttcagat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29937654 |
aatcatatgattccttacttttttaataatagctttactttcagtttccctggcagcaacaagaaaaacaaacactcaaattatcttaatgtcttcagat |
29937555 |
T |
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| Q |
307 |
tctgctcttctttctctacctgacaatcctgtcattgt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29937554 |
tctgctcttctttctctacctgacaatcctgtcattgt |
29937517 |
T |
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