View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13171_low_7 (Length: 319)

Name: NF13171_low_7
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13171_low_7
NF13171_low_7
[»] chr2 (1 HSPs)
chr2 (9-301)||(4064769-4065056)
[»] chr8 (1 HSPs)
chr8 (9-97)||(2992816-2992904)
[»] chr6 (1 HSPs)
chr6 (9-97)||(18359201-18359289)
[»] chr3 (2 HSPs)
chr3 (30-126)||(2613720-2613816)
chr3 (140-226)||(24184639-24184724)
[»] chr4 (1 HSPs)
chr4 (226-301)||(9865947-9866023)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 4064769 - 4065056
Alignment:
Q  9 gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaactaaagatctatca 108  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  4064769 gacatcatcacacttattggcttcatggtaagagcgatgcaccactacctctc----caagtcaagcaatcgaagaatcttcacaactaaagatctatca 4064864  T
Q  109 atcaggcttccattctcactagaaacctttagagaatccacattcaatttaattgctctaaatcctaacctttctcgcatacttcaaaccttcaaatact 208  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4064865 atcaggctttcattctcactagaaacctttagagaatccacattcaatttaattgctctaaatcctaacc-ttctcgcatacttcaaaccttcaaatact 4064963  T
Q  209 ccacaatgctaagccaaataggcgctacacataccaacacatttagcaaagtcaccaaccattccccatcacttctacagaaaacaccaccac 301  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  4064964 ccacaatgctatgccaaataggcgctacacataccaacacatttagcaaagtcaccaaccattccccatcacttctacggataaaaccaccac 4065056  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 2992904 - 2992816
Alignment:
Q  9 gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaacta 97  Q
    ||||||| |||| |||| |||||||||||||||| |||||  ||||||||| || |||||||||| |||| ||  ||||||||||||||    
T  2992904 gacatcagcacattgattggcttcatggtaagagtgatgcatcactacctcccattccaagtcaaacaatggacaaatcttcacaacta 2992816  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 18359289 - 18359201
Alignment:
Q  9 gacatcatcacactgatcggcttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaacta 97  Q
    ||||||| |||| |||| |||||||||||||||| |||||  ||||||||| || |||||||||| |||| ||  ||||||||||||||    
T  18359289 gacatcagcacattgattggcttcatggtaagagtgatgcatcactacctcccattccaagtcaaacaatggacaaatcttcacaacta 18359201  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 2613816 - 2613720
Alignment:
Q  30 ttcatggtaagagcgatgctccactacctctcactccaagtcaagcaatcgaagaatcttcacaactaaagatctatcaatcaggcttccattctca 126  Q
    ||||||||||||| ||| | || | |||| ||||||||| |||| ||||||| ||||||||| |||||||||||||  ||| || ||||||||||||    
T  2613816 ttcatggtaagagtgattcaccgcaacctttcactccaactcaaacaatcgatgaatcttcataactaaagatctacaaattagacttccattctca 2613720  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 24184639 - 24184724
Alignment:
Q  140 gagaatccacattcaatttaattgctctaaatcctaacctttctcgcatacttcaaaccttcaaatactccacaatgctaagccaaa 226  Q
    |||||||||||||||||| |  |||| | ||||| |||||| || |||||||||||||||||||| ||| | ||| |||| ||||||    
T  24184639 gagaatccacattcaattcatctgctttgaatccgaacctt-cttgcatacttcaaaccttcaaacactacccaaagctatgccaaa 24184724  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 9865947 - 9866023
Alignment:
Q  226 ataggcgctacacataccaacacatttagcaaagtca-ccaaccattccccatcacttctacagaaaacaccaccac 301  Q
    |||||||||||||||| |||||| |||||||||| || |||||||||| |||||||||| || |  |||||||||||    
T  9865947 ataggcgctacacatatcaacacctttagcaaagccatccaaccattcaccatcacttccacggttaacaccaccac 9866023  T

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