View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13171_low_8 (Length: 291)
Name: NF13171_low_8
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 4301471 - 4301727
Alignment:
| Q |
17 |
taattattgtttgtggtgctgagttagctggtctgaaaatttaagaggagtgctagtgtataactgtctcaaaccttttcnnnnnnnngttggattcttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4301471 |
taattattgtttgtggtgctgagttagctggtctgaaaatttaagaggagtgctagtgtataactgtctcaaacctttt--tttttttgttggattcttg |
4301568 |
T |
|
| Q |
117 |
tttcttcctcgttcttttgcaaaaatattgaatttttactcatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301569 |
tttcttcctcgttcttttgcaaaaatattgaatttttactgatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacc |
4301668 |
T |
|
| Q |
217 |
caacaaaccttaataagccaattaacgaattcatgtcatggctctccttagcaccacaa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4301669 |
caacaaaccttaataagccaattaacgaattcatgtcatggctctccttggcaccacaa |
4301727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 4296112 - 4296240
Alignment:
| Q |
148 |
atttttactcatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaatt |
247 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |
|
|
| T |
4296112 |
atttttactgatatctttgtttatgtttctacagaattgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaatt |
4296211 |
T |
|
| Q |
248 |
catgtcatggctctccttagcaccacaat |
276 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
4296212 |
catgtcatggctctccttggcaccacaat |
4296240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 4307346 - 4307464
Alignment:
| Q |
158 |
atatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatgg |
257 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || ||||||| | ||||||| |||||| | |||| ||| ||||| |
|
|
| T |
4307346 |
atatgtttgtttatgcttctgcagaattgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatgg |
4307445 |
T |
|
| Q |
258 |
ctctccttagcaccacaat |
276 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
4307446 |
ctctctttggcaccacaat |
4307464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 4311923 - 4312023
Alignment:
| Q |
179 |
cagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaa---ccttaataagccaattaacgaattcatgtcatggctctccttagcaccacaa |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||||| | |||| |||||||||||| ||||| ||||||||| |
|
|
| T |
4311923 |
cagaattgctgcaaaggcaccttatcaaacaagtaatccagcagcattccttaataagccaattgatgaatccatgtcatggctatccttggcaccacaa |
4312022 |
T |
|
| Q |
276 |
t |
276 |
Q |
| |
|
| |
|
|
| T |
4312023 |
t |
4312023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University