View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13171_low_9 (Length: 289)
Name: NF13171_low_9
Description: NF13171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13171_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 44881900 - 44882183
Alignment:
| Q |
1 |
aaaactgtgtgctggagtctgagggacttttgtatgtactcagtatacatacattgtgtcatttgtctcactttgacaattattgtataaatgtattcaa |
100 |
Q |
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| T |
44881900 |
aaaactgcgtgctggagtctgagggacttttgtatgtactcagtatacatacattgtgtcatttgtctcactttgacaattattgtataaatatatttaa |
44881999 |
T |
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| Q |
101 |
cttttttaaaatattggctgcagtgaaatcctgatactatagagaatcgtggtcaaatgcaatggatgcgaggttagttacagtcgtagaggtattgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
44882000 |
cttttttaaaatattggctgcagtgaaatcctgatactatagagaatcgtggtcaaatgcaatggatgcgaggtcagttacagttgtagaggtattgaaa |
44882099 |
T |
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| Q |
201 |
actctgatgtctcagtctagatggtagtcgcatacctttgtttaaaaccttaaattactatcaaagtaaaatagtataatctac |
284 |
Q |
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| T |
44882100 |
actctgatgtctcagtctagatggtagtcgcatacctttgtttaaaaccttaaattactatcaaagtaaaatagtataagctac |
44882183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8984327 - 8984270
Alignment:
| Q |
1 |
aaaactgtgtgctggagtctgagggacttttgtatgtactcagtatacatacattgtg |
58 |
Q |
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| T |
8984327 |
aaaactatgtgctggagtctgagagatttttgtatgtacttagtatacatacattgtg |
8984270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 8995062 - 8994970
Alignment:
| Q |
193 |
tattgaaaactctgatgtctcagtctagatggtagtcgcatacctttgtttaaaaccttaaattactatcaaagtaaaatagtataatctacc |
285 |
Q |
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|||||||||||||||||| | |||||||| || ||| |||| |||||||| | |||||| |||| |||||||| ||||||||| || ||||| |
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| T |
8995062 |
tattgaaaactctgatgttgctgtctagatcgtggtcacatagctttgtttgagaccttacattattatcaaagcaaaatagtacaagctacc |
8994970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8995441 - 8995384
Alignment:
| Q |
1 |
aaaactgtgtgctggagtctgagggacttttgtatgtactcagtatacatacattgtg |
58 |
Q |
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|||||| |||||||||||| ||| || ||||||| ||||| ||||||||||| ||||| |
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| T |
8995441 |
aaaactatgtgctggagtcagagagatttttgtacgtacttagtatacatacgttgtg |
8995384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 8984124 - 8984060
Alignment:
| Q |
179 |
tacagtcgtagaggtattgaaaactctgatgtctcagtctagatggtagtcgcatacctttgttt |
243 |
Q |
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|||||||| |||| || ||||||||||||||| |||||||||| || ||| |||| |||||||| |
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| T |
8984124 |
tacagtcgcagagatactgaaaactctgatgtagcagtctagatcgtggtcacatagctttgttt |
8984060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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