View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_high_1 (Length: 651)
Name: NF13172_high_1
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 34936655 - 34936027
Alignment:
| Q |
1 |
cctagcctctccatctcctccactgtgttctcctagttcacggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34936655 |
cctagcctctccatctcctccaccgtgttctcctggttcacggccaaatcaaataggcggggaaatttaatccttaaccgaatttccccaacacagttat |
34936556 |
T |
|
| Q |
101 |
catgccagaacaaagtcatatgtttacattttggtggttaaagatggaaatttctaatttaactttgttcgataaagttaaacgtttatcattttgatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34936555 |
catgccagaacaaagtcatatgtttatattttggtggttgaagatggaaatttctaatttaactttgttcgataaagttaaacgtttatcattttgatgg |
34936456 |
T |
|
| Q |
201 |
ttgaagataaaaatcttttatttagcttatgatctccagctttgatgtcgtaatcctattttatatatggttttgtcttag--nnnnnnnnnccagcttg |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34936455 |
ttgaagataaaaatctttaatttagcttatgatctccagctttgatgtcgtaatcctattttatatatggttttgtcttagtttttttttttccagcttg |
34936356 |
T |
|
| Q |
299 |
ttggtttttagttccgcgttttgattatgcaatgaaatatttgtactcttgatttctatcacgtgcttggtagaaatcctttttcgttaatatatttcat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
34936355 |
ttggtttttagttccgcgttttgattatgcaatgaaatatttgtactcttgatttctatcatgtgcttggtagaaatactttttcgttaatatatttcat |
34936256 |
T |
|
| Q |
399 |
tttgtgttgttaatttcttttgaatattggttattgttaagtttcaaaatgtgcacgttgtagtcatttgtttaattnnnnnnnncgttcaggtgaatat |
498 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34936255 |
tttgtgttgttagtttctttttaatattggttattgttaagtttcaaaatgtgcacgttgtagtcatttgtttaattaaaaaaaacgttcaggtgaatat |
34936156 |
T |
|
| Q |
499 |
tagatgctaagatagctaattcaaatcatcaaatttcattatttttgttgcctaaccaaattacattttttcgaggagaaaatgaagttttggatttcct |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34936155 |
tagatgctaagatagctaattcaaatcatc-aatttcattatttttgttgcctaagcaaattgcattttttcgaggagaaaatgaagttttggatttcct |
34936057 |
T |
|
| Q |
599 |
tcggtaagtgtgatgaaccttaccattttt |
628 |
Q |
| |
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|| |||||| |||||||||||||||||||| |
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| T |
34936056 |
tctgtaagtctgatgaaccttaccattttt |
34936027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17404502 - 17404391
Alignment:
| Q |
1 |
cctagcctctccatctcctccactgtgttctcctagttcacggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttat |
100 |
Q |
| |
|
|||| |||||||||||||||||| | | || || |||||||||| |||||||||||||||||||||| |||| |||| |||| ||||||| || ||| |
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| T |
17404502 |
cctaacctctccatctcctccaccgaggacttctggttcacggccgaatcaaataggcggggaaatttgttcctcaacgaaattcccccaacccagctat |
17404403 |
T |
|
| Q |
101 |
catgccagaaca |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17404402 |
catgccagaaca |
17404391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 32730027 - 32729950
Alignment:
| Q |
37 |
ttcacggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgccagaacaaa |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||| |||||||||| || |||| || |||||||||||| |
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|
| T |
32730027 |
ttcacggccaaatcaaataggcgaggaaatttgttcatcaactgaatttccccgacccagttgtcgtgccagaacaaa |
32729950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 16586953 - 16586889
Alignment:
| Q |
43 |
gccaaatcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgcca |
107 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| || ||||||||||| || | ||||||||||| |
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|
| T |
16586953 |
gccagatcaaaaaggcggggaaatttaatccgcaaaggaatttcccctacccaattatcatgcca |
16586889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 42679328 - 42679286
Alignment:
| Q |
165 |
ttgttcgataaagttaaacgtttatcattttgatggttgaaga |
207 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
42679328 |
ttgttcgataaagttaagcgtttatctttttgatggttgaaga |
42679286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 18132910 - 18132975
Alignment:
| Q |
48 |
atcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgccagaacaa |
113 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||||||| || ||||||||||||||||||| |
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|
| T |
18132910 |
atcaaatagtcgaggaaatttattcctcgacggaatttcccccacccagttatcatgccagaacaa |
18132975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 18144697 - 18144762
Alignment:
| Q |
48 |
atcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgccagaacaa |
113 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||||||| || ||||||||||||||||||| |
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|
| T |
18144697 |
atcaaatagtcgaggaaatttattcctcgacggaatttcccccacccagttatcatgccagaacaa |
18144762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 21376409 - 21376461
Alignment:
| Q |
40 |
acggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaac |
92 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
21376409 |
acggacaaatcaaataggcggggaaatttaagttttagcggaatttccccaac |
21376461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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