View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13172_high_11 (Length: 353)

Name: NF13172_high_11
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13172_high_11
NF13172_high_11
[»] chr8 (3 HSPs)
chr8 (1-353)||(4764016-4764368)
chr8 (324-353)||(10438005-10438034)
chr8 (318-351)||(43368613-43368646)
[»] chr2 (6 HSPs)
chr2 (9-245)||(43253621-43253857)
chr2 (316-351)||(15120307-15120342)
chr2 (320-350)||(4508306-4508336)
chr2 (317-351)||(10563472-10563506)
chr2 (315-351)||(2790362-2790398)
chr2 (319-351)||(33267433-33267465)
[»] chr1 (3 HSPs)
chr1 (320-351)||(33723297-33723328)
chr1 (322-351)||(17269374-17269403)
chr1 (322-351)||(24460318-24460347)
[»] chr5 (4 HSPs)
chr5 (315-349)||(28982136-28982170)
chr5 (322-351)||(17369327-17369356)
chr5 (311-351)||(8177438-8177478)
chr5 (315-351)||(35299889-35299925)
[»] chr3 (2 HSPs)
chr3 (318-351)||(16072954-16072987)
chr3 (315-351)||(27896088-27896124)
[»] chr7 (1 HSPs)
chr7 (323-351)||(25511751-25511779)
[»] chr4 (2 HSPs)
chr4 (319-351)||(15173217-15173249)
chr4 (323-351)||(25309316-25309344)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 4764368 - 4764016
Alignment:
Q  1 cagcatttgcatattcaagtataagctgcttagctttcttctcagaagttggacttaagtttttgcttaagtcccttgcaactgttttgccaggtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764368 cagcatttgcatattcaagtataagctgcttagctttcttctcagaagttggacttaagtttttgcttaagtcccttgcaactgttttgccaggtgcagg 4764269  T
Q  101 ttgatagtttcttaattcatgtctaaaacaagcattaagccacttcaaataaactagttcttcaacatctgtgcatctatcagcttttagttgctcaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764268 ttgatagtttcttaattcatgtctaaaacaagcattaagccacttcaaataaactagttcttcaacatctgtgcatctatcagcttttagttgctcaatt 4764169  T
Q  201 tccttcgtcaagtcttcgtttgcttgtctgagacggtcactttcttcccttagagcatctgcctgcattcaaaataaaaggtgaaattgagtttgacagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764168 tccttcgtcaagtcttcgtttgcttgtctgagacggtcactttcttcccttagagcatctgcctgcattcaaaataaaaggtgaaattgagtttgacagt 4764069  T
Q  301 tactcacgaaagagctaaggacctgtttggattgacttatttgaacttatcca 353  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4764068 tactcacgaaagagctagggacctgtttggattgacttatttgaacttatcca 4764016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 10438034 - 10438005
Alignment:
Q  324 tgtttggattgacttatttgaacttatcca 353  Q
    ||||||||||||||||||||||||||||||    
T  10438034 tgtttggattgacttatttgaacttatcca 10438005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 43368613 - 43368646
Alignment:
Q  318 aggacctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||| ||||||    
T  43368613 aggacctgtttggattgacttatttgatcttatc 43368646  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 43253621 - 43253857
Alignment:
Q  9 gcatattcaagtataagctgcttagctttcttctcagaagttggacttaagtttttgcttaagtcccttgcaactgttttgccaggtgcaggttgatagt 108  Q
    |||||||||||||||||||| || ||||||||||||||||| || |||||| |||| || || ||| |||||||||||||    ||||  || ||||| |    
T  43253621 gcatattcaagtataagctgtttggctttcttctcagaagtggggcttaagcttttactcaaatcctttgcaactgttttattgggtggtggctgataat 43253720  T
Q  109 ttcttaattcatgtctaaaacaagcattaagccacttcaaataaactagttcttcaacatctgtgcatctatcagcttttagttgctcaatttccttcgt 208  Q
    | |  || |||| ||| ||||||||||| | ||||  ||  ||||||| |||||||| ||| |  ||||  ||||  | |||||||||||||| |||| |    
T  43253721 tacgcaactcatatcttaaacaagcatttatccaccgcatgtaaactaattcttcaagatccgaacatcggtcagaatgtagttgctcaatttgcttcat 43253820  T
Q  209 caagtcttcgtttgcttgtctgagacggtcactttct 245  Q
    |||| | |||||| ||| ||| ||||  |||||||||    
T  43253821 caagccctcgttttcttttctaagacactcactttct 43253857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 351
Target Start/End: Complemental strand, 15120342 - 15120307
Alignment:
Q  316 taaggacctgtttggattgacttatttgaacttatc 351  Q
    |||||| |||||||||||||||||||||||||||||    
T  15120342 taaggatctgtttggattgacttatttgaacttatc 15120307  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 4508336 - 4508306
Alignment:
Q  320 gacctgtttggattgacttatttgaacttat 350  Q
    |||||||||||||||||||||||||||||||    
T  4508336 gacctgtttggattgacttatttgaacttat 4508306  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 10563472 - 10563506
Alignment:
Q  317 aaggacctgtttggattgacttatttgaacttatc 351  Q
    |||| ||||||||||||||||||||||||||||||    
T  10563472 aagggcctgtttggattgacttatttgaacttatc 10563506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 2790398 - 2790362
Alignment:
Q  315 ctaaggacctgtttggattgacttatttgaacttatc 351  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  2790398 ctaagggcctgtttggattggcttatttgaacttatc 2790362  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 33267433 - 33267465
Alignment:
Q  319 ggacctgtttggattgacttatttgaacttatc 351  Q
    |||| ||||||||||||||||||||||||||||    
T  33267433 ggacttgtttggattgacttatttgaacttatc 33267465  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 351
Target Start/End: Original strand, 33723297 - 33723328
Alignment:
Q  320 gacctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||||||||    
T  33723297 gacctgtttggattgacttatttgaacttatc 33723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Complemental strand, 17269403 - 17269374
Alignment:
Q  322 cctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||||||    
T  17269403 cctgtttggattgacttatttgaacttatc 17269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 24460318 - 24460347
Alignment:
Q  322 cctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||||||    
T  24460318 cctgtttggattgacttatttgaacttatc 24460347  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 28982170 - 28982136
Alignment:
Q  315 ctaaggacctgtttggattgacttatttgaactta 349  Q
    |||||||||||||||||||||||||||||| ||||    
T  28982170 ctaaggacctgtttggattgacttatttgatctta 28982136  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Complemental strand, 17369356 - 17369327
Alignment:
Q  322 cctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||||||    
T  17369356 cctgtttggattgacttatttgaacttatc 17369327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 8177438 - 8177478
Alignment:
Q  311 agagctaaggacctgtttggattgacttatttgaacttatc 351  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  8177438 agagcttaagacctgtttggattggcttatttgaacttatc 8177478  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 35299925 - 35299889
Alignment:
Q  315 ctaaggacctgtttggattgacttatttgaacttatc 351  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  35299925 ctaagggcctgtttggattgacttatttgagcttatc 35299889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 16072954 - 16072987
Alignment:
Q  318 aggacctgtttggattgacttatttgaacttatc 351  Q
    ||||||||||||||||||||||||||| ||||||    
T  16072954 aggacctgtttggattgacttatttgagcttatc 16072987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 27896088 - 27896124
Alignment:
Q  315 ctaaggacctgtttggattgacttatttgaacttatc 351  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  27896088 ctaagggcctgtttggattggcttatttgaacttatc 27896124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 25511779 - 25511751
Alignment:
Q  323 ctgtttggattgacttatttgaacttatc 351  Q
    |||||||||||||||||||||||||||||    
T  25511779 ctgtttggattgacttatttgaacttatc 25511751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 15173217 - 15173249
Alignment:
Q  319 ggacctgtttggattgacttatttgaacttatc 351  Q
    ||||| |||||||||||||||||||||||||||    
T  15173217 ggaccagtttggattgacttatttgaacttatc 15173249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 25309344 - 25309316
Alignment:
Q  323 ctgtttggattgacttatttgaacttatc 351  Q
    |||||||||||||||||||||||||||||    
T  25309344 ctgtttggattgacttatttgaacttatc 25309316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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