View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13172_high_12 (Length: 320)
Name: NF13172_high_12
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 42855225 - 42855511
Alignment:
| Q |
22 |
aagtcttccttaatttaaattttctaatactcagatttatgtttctagaagtaataaattacaaggtgctttcaaacttcttcctccttaatttcaaaga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855225 |
aagtcttccttaatttaaattttctaatactcagatttatgtttctagaagtaataaattacaaggtgctttcaaacttcttcctccttaatttcaaaga |
42855324 |
T |
|
| Q |
122 |
ctattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttatccattttcctccgacgagcaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855325 |
ctattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttatccattttcctccgacgagcaa |
42855424 |
T |
|
| Q |
222 |
ctatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggtgtaacgcattactcttattttctgtttctgcatatt |
308 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855425 |
ctatgcttggaagttccaaagcccacaacgatgtaagcaccaaggtgtggtgtaacgcattactcttattttctgtttctgcatatt |
42855511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 99 - 308
Target Start/End: Original strand, 42856895 - 42857104
Alignment:
| Q |
99 |
ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcattt |
198 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |||||||||||| || || ||| | |||||||||| |||| |||||||||||||| ||| |
|
|
| T |
42856895 |
ttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagagagtcgttt |
42856994 |
T |
|
| Q |
199 |
atccattttcctccgacgagcaactatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggtgtaacgcattactcttattttctgtt |
298 |
Q |
| |
|
||| | ||||||||||| ||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
42856995 |
atctaatttcctccgacaagcaactatgcatggaagttccaaagctcacaaaactgtaagcaccaaggtgtgttgtaacacatcactcttattttctgtt |
42857094 |
T |
|
| Q |
299 |
tctgcatatt |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
42857095 |
tctgcatatt |
42857104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 42860928 - 42861100
Alignment:
| Q |
54 |
agatttatgtttctagaagtaataaattacaaggtgctttcaaac---ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgact |
150 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||| ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
42860928 |
agatttatgattctggaagtaataa----caaggtgtcttcaaacatgttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgact |
42861023 |
T |
|
| Q |
151 |
cgtattgtagaaggactacatgagcttgcgtacactagagagtcatttatccattttcctccgacgagcaactatgc |
227 |
Q |
| |
|
|| || ||| | |||||||||| |||| |||||||||||||| |||||| | ||||||||||| ||||||||||| |
|
|
| T |
42861024 |
tgtcttttaggatgactacatgaacttggatacactagagagtcgtttatctaatttcctccgacaagcaactatgc |
42861100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 42853362 - 42853458
Alignment:
| Q |
130 |
gtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttatccattttcctccgacgagcaactatg |
226 |
Q |
| |
|
||||||| ||||||| ||||||| || ||| |||||||||||| |||| ||||||| |||||| |||| | | ||||||||||| |||| ||||| |
|
|
| T |
42853362 |
gtgttgacaatgttttggactcgtcttttaggaggactacatgaacttggatacactacagagtcgtttaactaatttcctccgacaagcagctatg |
42853458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 27482 - 27605
Alignment:
| Q |
101 |
cttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttat |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| || || ||| |||| ||||||| |||| ||||||||| || ||||| |
|
|
| T |
27482 |
cttcctccttaatttcaaagact--tattgtgttgacaatgttttcgacttgtcttttaggaggagtacatgaacttggaaacactagaggctcgtttat |
27579 |
T |
|
| Q |
201 |
ccattttcctccgacgagcaactatg |
226 |
Q |
| |
|
| |||||||||||| |||||||||| |
|
|
| T |
27580 |
ctcttttcctccgacaagcaactatg |
27605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University