View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_high_14 (Length: 298)
Name: NF13172_high_14
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 835600 - 835888
Alignment:
| Q |
1 |
cctttgccggacgtgttcaagcaaatgataaagagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatg |
100 |
Q |
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| T |
835600 |
cctttgccggacgtgttcaagcaaatgataaagagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatg |
835699 |
T |
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| Q |
101 |
atgtaggggactgcattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttc |
200 |
Q |
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| T |
835700 |
atgtaggggactgcattcctcctcacattgaccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttc |
835799 |
T |
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| Q |
201 |
aaatctgaaagcaattcaacccggagagttttcgggtcctgcttctatttctttgcctctagggtaagctacttattttccatattctt |
289 |
Q |
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| T |
835800 |
aaatctgaaagaaattcaacccggagagttttcgggtcctgcttctatttctttgcctctagggtaagctacttattttccattttctt |
835888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 813880 - 814123
Alignment:
| Q |
14 |
tgttcaagcaaatgataaagagaatggttagatggaacataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactg |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
813880 |
tgttcaagcaaatgataaagaggatggttagatggaaaataattcctccgacgtgtgttcctgacagttgcattgtcaacatatatgatgtaggggactg |
813979 |
T |
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| Q |
114 |
cattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctcattcttgaacgaagctaaaatattatttggttcaaatctgaaagca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
813980 |
cattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctctttcttgaacaaagctaaaatattatttggttcaaatttgaaagct |
814079 |
T |
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| Q |
214 |
attcaacccggagagttttcgggtcctgcttctatttctttgcc |
257 |
Q |
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||| || |||||||||| ||||| ||||| ||||||||||| |
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| T |
814080 |
gttcgtccaggagagttttttggtcccgcttcgatttctttgcc |
814123 |
T |
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