View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13172_high_6 (Length: 464)
Name: NF13172_high_6
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 1163656 - 1163360
Alignment:
| Q |
1 |
agttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
1163656 |
agttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaac |
1163557 |
T |
|
| Q |
101 |
tcctcttcgaccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattgga |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
1163556 |
tcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttatagacctttttttccattgga |
1163457 |
T |
|
| Q |
201 |
ggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163456 |
ggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc |
1163360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 3299682 - 3299965
Alignment:
| Q |
11 |
aagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcga |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
3299682 |
aagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga |
3299781 |
T |
|
| Q |
111 |
ccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgctt |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299782 |
ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgctt |
3299881 |
T |
|
| Q |
211 |
gatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc |
297 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3299882 |
gatg---gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc |
3299965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 3392575 - 3392858
Alignment:
| Q |
11 |
aagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcga |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
3392575 |
aagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga |
3392674 |
T |
|
| Q |
111 |
ccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgctt |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392675 |
ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgctt |
3392774 |
T |
|
| Q |
211 |
gatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc |
297 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3392775 |
gatg---gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc |
3392858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1850083 - 1850287
Alignment:
| Q |
1 |
agttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1850083 |
agttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaac |
1850182 |
T |
|
| Q |
101 |
tcctcttcgaccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattgga |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850183 |
tcctcttcg---------------accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattgga |
1850267 |
T |
|
| Q |
201 |
ggatttgcttgatggatgat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1850268 |
ggatttgcttgatggatgat |
1850287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 38987873 - 38988140
Alignment:
| Q |
18 |
gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| | || | |
|
|
| T |
38987873 |
gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca |
38987972 |
T |
|
| Q |
118 |
gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat |
217 |
Q |
| |
|
||| |||||||||||||| |||| | | ||| || | ||| || | ||| || ||||||||| ||||||||||||| |||||||| | |
|
|
| T |
38987973 |
gcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctaccagaccttttgatccattggaggacttgcttgacg--- |
38988069 |
T |
|
| Q |
218 |
gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa |
288 |
Q |
| |
|
||||||||| | || |||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
38988070 |
gatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaacaacaa |
38988140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 40418449 - 40418712
Alignment:
| Q |
16 |
gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa |
115 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| || ||| ||||||||||| |||||||||||||| || || |
|
|
| T |
40418449 |
gagaatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaa |
40418548 |
T |
|
| Q |
116 |
gagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatgg |
215 |
Q |
| |
|
||||| ||||||| ||| |||||| || | ||| || ||| || | ||| || ||||||||| |||||||||||| |||||||| || |
|
|
| T |
40418549 |
gagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgtaatcccccctaccagaccttttgttccattggaggacttgcttgacgg |
40418648 |
T |
|
| Q |
216 |
atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaa |
282 |
Q |
| |
|
||||| ||| |||| |||||||||||| ||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
40418649 |
atgat---ctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaa |
40418712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 39726592 - 39726863
Alignment:
| Q |
18 |
gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| | || | |
|
|
| T |
39726592 |
gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca |
39726691 |
T |
|
| Q |
118 |
gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat |
217 |
Q |
| |
|
||| |||||||||||||| |||| | | ||| || | ||| || | ||| || ||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
39726692 |
gcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctatcagaccttttgatccattggaggacttgcttgacggat |
39726791 |
T |
|
| Q |
218 |
gat-gatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa |
288 |
Q |
| |
|
||| | ||| |||| |||||||||||| ||||| | ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39726792 |
gatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataataacaacaa |
39726863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 39879988 - 39880232
Alignment:
| Q |
18 |
gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| || ||| |||||||| || |||||||| ||||| | |||| |
|
|
| T |
39879988 |
gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaaga |
39880087 |
T |
|
| Q |
118 |
gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat |
217 |
Q |
| |
|
||| ||||||| ||| |||||| || | ||| || ||| ||||| ||| || |||||||||| |||||||||||| |||||||| | |
|
|
| T |
39880088 |
gcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaatcccccctaccagacctttttttccattggaggacttgcttgacg--- |
39880184 |
T |
|
| Q |
218 |
gatgatctacttacaagcttaaacaaacatcacttctgttgatgtttt |
265 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
39880185 |
gatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt |
39880232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 1163252 - 1163190
Alignment:
| Q |
386 |
tttatgtttatcagaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattat |
448 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
1163252 |
tttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattat |
1163190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 39169041 - 39169098
Alignment:
| Q |
36 |
tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagac |
93 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
39169041 |
tgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagac |
39169098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 40418870 - 40418920
Alignment:
| Q |
398 |
agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattat |
448 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
40418870 |
agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattat |
40418920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 1163302 - 1163270
Alignment:
| Q |
355 |
cgataacaagaacaacttactttgttgcaattt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1163302 |
cgataacaagaacaacttactttgttgcaattt |
1163270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
| Q |
398 |
agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgt |
442 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
38988292 |
agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt |
38988336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 25912207 - 25912122
Alignment:
| Q |
16 |
gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaact |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |||| |||||||||||||| |
|
|
| T |
25912207 |
gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaattatctacagcaagaccctaaact |
25912122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 25912046 - 25911942
Alignment:
| Q |
181 |
agacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataac |
280 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||| ||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
25912046 |
agaccttttgttccattggaggacttgcttgacggatgat---ctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataat |
25911950 |
T |
|
| Q |
281 |
aaaaacaa |
288 |
Q |
| |
|
|| ||||| |
|
|
| T |
25911949 |
aacaacaa |
25911942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 44444543 - 44444435
Alignment:
| Q |
177 |
tagaagacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaa |
276 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
44444543 |
tagaagatcttttgttccattagaggacttgcttgacggatgat---ctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaa |
44444447 |
T |
|
| Q |
277 |
taacaaaaacaa |
288 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
44444446 |
taacgaaaacaa |
44444435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 448
Target Start/End: Complemental strand, 25911775 - 25911725
Alignment:
| Q |
398 |
agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattat |
448 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
25911775 |
agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattat |
25911725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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