View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_10 (Length: 355)
Name: NF13172_low_10
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 46765621 - 46765280
Alignment:
| Q |
1 |
taatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaat |
100 |
Q |
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| T |
46765621 |
taatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaat |
46765522 |
T |
|
| Q |
101 |
atatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagttaggattattatgtaacttaaa |
200 |
Q |
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| T |
46765521 |
atatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagttaggattattatgtaacttaaa |
46765422 |
T |
|
| Q |
201 |
cagcaaacatgaggttaatggtaacatgaacgagacatacttgatcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaacg |
300 |
Q |
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| T |
46765421 |
cagcaaacatgaggttaatggtaacatgaacgagacatacttgatcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaacg |
46765322 |
T |
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| Q |
301 |
gtaggagagagcgatccgataattcaaatctccaagccatat |
342 |
Q |
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| T |
46765321 |
gtaggagagagcgatccgataattcaaatctccaagccatat |
46765280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 1085975 - 1085814
Alignment:
| Q |
3 |
atcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaatat |
102 |
Q |
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| T |
1085975 |
atcttaccaagcaggtgttcgccttttctcctttggatgcatatcatctccagcatacctatctgaattggttgaatacttatatgttggagggaaataa |
1085876 |
T |
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| Q |
103 |
atcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgcca |
164 |
Q |
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| T |
1085875 |
atcttcccttctttccatcctgcaaatgcacggcctcgcttttgctctattctcaactgcca |
1085814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 1085728 - 1085631
Alignment:
| Q |
245 |
tcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaacggtaggagagagcgatccgataattcaaatctccaagccatat |
342 |
Q |
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| T |
1085728 |
tcattctctaacaatgctctccagttttgcatctcaataagcgccttcgcagaacggtagttgagggctattcgataatttaaatctccaagccatat |
1085631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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