View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13172_low_13 (Length: 299)

Name: NF13172_low_13
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13172_low_13
NF13172_low_13
[»] chr5 (11 HSPs)
chr5 (95-141)||(1463940-1463986)
chr5 (95-141)||(20735155-20735201)
chr5 (95-141)||(18303058-18303104)
chr5 (95-139)||(38230185-38230229)
chr5 (99-141)||(37417114-37417156)
chr5 (106-141)||(4674806-4674841)
chr5 (106-141)||(25346253-25346288)
chr5 (111-141)||(36045130-36045160)
chr5 (95-141)||(37304003-37304048)
chr5 (95-140)||(30733190-30733235)
chr5 (108-140)||(36091309-36091341)
[»] chr1 (16 HSPs)
chr1 (95-144)||(47763365-47763414)
chr1 (95-141)||(13870061-13870107)
chr1 (95-141)||(40678892-40678938)
chr1 (97-141)||(17954841-17954885)
chr1 (99-141)||(17350130-17350172)
chr1 (95-141)||(25819254-25819300)
chr1 (96-141)||(19976533-19976578)
chr1 (95-144)||(52833086-52833135)
chr1 (106-141)||(35111718-35111753)
chr1 (95-133)||(2044944-2044982)
chr1 (95-141)||(29106848-29106894)
chr1 (99-141)||(39238785-39238827)
chr1 (106-138)||(19516479-19516511)
chr1 (106-140)||(12675734-12675768)
chr1 (99-141)||(29491539-29491580)
chr1 (109-141)||(38021321-38021353)
[»] chr8 (11 HSPs)
chr8 (95-141)||(2800088-2800134)
chr8 (95-141)||(35253804-35253850)
chr8 (95-141)||(1588836-1588882)
chr8 (95-141)||(10292421-10292467)
chr8 (95-141)||(31129371-31129417)
chr8 (95-141)||(38790552-38790598)
chr8 (95-139)||(18009695-18009739)
chr8 (95-138)||(35301143-35301186)
chr8 (95-141)||(2696602-2696648)
chr8 (107-141)||(10310351-10310385)
chr8 (99-141)||(7314802-7314844)
[»] chr6 (6 HSPs)
chr6 (95-141)||(14981682-14981728)
chr6 (95-141)||(29284187-29284233)
chr6 (95-143)||(24470371-24470419)
chr6 (95-141)||(9064935-9064981)
chr6 (99-141)||(33628925-33628967)
chr6 (95-141)||(11636755-11636801)
[»] chr4 (17 HSPs)
chr4 (95-141)||(8690283-8690329)
chr4 (95-141)||(9693031-9693077)
chr4 (95-141)||(14149862-14149908)
chr4 (95-141)||(28520711-28520757)
chr4 (95-141)||(48968190-48968236)
chr4 (95-141)||(15640423-15640469)
chr4 (95-141)||(52031276-52031322)
chr4 (95-141)||(53815765-53815811)
chr4 (95-141)||(36954206-36954252)
chr4 (95-144)||(5909763-5909812)
chr4 (97-141)||(46799476-46799520)
chr4 (95-137)||(46799569-46799611)
chr4 (95-136)||(27296896-27296937)
chr4 (144-196)||(29269355-29269412)
chr4 (111-139)||(40150544-40150572)
chr4 (98-141)||(42411436-42411480)
chr4 (113-141)||(52330907-52330935)
[»] chr3 (15 HSPs)
chr3 (95-141)||(27183661-27183707)
chr3 (95-139)||(38555008-38555052)
chr3 (95-141)||(9625052-9625098)
chr3 (95-141)||(32453503-32453549)
chr3 (95-141)||(36476428-36476474)
chr3 (95-138)||(52030193-52030236)
chr3 (95-141)||(7448343-7448389)
chr3 (95-141)||(7456485-7456531)
chr3 (95-141)||(10959202-10959248)
chr3 (95-141)||(24559458-24559504)
chr3 (96-138)||(42823966-42824008)
chr3 (96-141)||(14868754-14868799)
chr3 (111-144)||(44671535-44671568)
chr3 (98-141)||(24136733-24136778)
chr3 (98-141)||(45118712-45118756)
[»] chr2 (7 HSPs)
chr2 (95-141)||(43871022-43871068)
chr2 (98-141)||(29035045-29035088)
chr2 (95-141)||(34034419-34034465)
chr2 (95-141)||(2304359-2304405)
chr2 (106-141)||(44187773-44187808)
chr2 (111-141)||(32527073-32527103)
chr2 (106-136)||(36106894-36106924)
[»] scaffold0809 (1 HSPs)
scaffold0809 (98-141)||(4789-4832)
[»] chr7 (8 HSPs)
chr7 (95-138)||(24397017-24397060)
chr7 (96-141)||(31475821-31475866)
chr7 (98-139)||(41139158-41139199)
chr7 (106-141)||(14818356-14818391)
chr7 (106-141)||(15265354-15265389)
chr7 (111-141)||(19126806-19126836)
chr7 (107-141)||(41417267-41417301)
chr7 (95-136)||(47635124-47635164)
[»] scaffold0308 (1 HSPs)
scaffold0308 (95-141)||(7145-7191)
[»] scaffold0227 (1 HSPs)
scaffold0227 (95-141)||(21918-21963)
[»] scaffold0070 (1 HSPs)
scaffold0070 (109-141)||(12634-12666)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 1463986 - 1463940
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1463986 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 1463940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 20735155 - 20735201
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20735155 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 20735201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 18303058 - 18303104
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  18303058 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 18303104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 38230185 - 38230229
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 139  Q
    |||||||| | ||||||||||||||||||||||||||||||||||    
T  38230185 caggtagcatagtggctagaaattcacttttaaagtgaataagtg 38230229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 37417114 - 37417156
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  37417114 tagcctagtggctagaaattcacttttaaagtgagtaagtggg 37417156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 4674806 - 4674841
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||| |||||||||||||||||||||||||||||||    
T  4674806 gtggttagaaattcacttttaaagtgaataagtggg 4674841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 25346288 - 25346253
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||| |||||    
T  25346288 gtggctagaaattcacttttaaagtgaatacgtggg 25346253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 36045130 - 36045160
Alignment:
Q  111 tagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||||    
T  36045130 tagaaattcacttttaaagtgaataagtggg 36045160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 37304048 - 37304003
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  37304048 caggtagcctagtggctataaattca-ttttaaagtgaataagtggg 37304003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 30733235 - 30733190
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtgg 140  Q
    |||||||||| ||||||||||||| | |||| ||||||||||||||    
T  30733235 caggtagcctagtggctagaaatttatttttcaagtgaataagtgg 30733190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 36091309 - 36091341
Alignment:
Q  108 ggctagaaattcacttttaaagtgaataagtgg 140  Q
    |||||||||| ||||||||||||||||||||||    
T  36091309 ggctagaaatgcacttttaaagtgaataagtgg 36091341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 47763365 - 47763414
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 144  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47763365 caggtagcctagtggctagaaattcacttttaaagtgaataagtgggatg 47763414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 13870061 - 13870107
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  13870061 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 13870107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 40678938 - 40678892
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40678938 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 40678892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 17954841 - 17954885
Alignment:
Q  97 ggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  17954841 ggtagcctagtggctagaaattcacttttaaagtgaataagtggg 17954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 17350172 - 17350130
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17350172 tagcctagtggctagaaattcacttttaaagtgaataagtggg 17350130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 25819300 - 25819254
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  25819300 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 25819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 19976533 - 19976578
Alignment:
Q  96 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||    
T  19976533 aggtagcctagtggctagaaattcacttttaaagtgaatatgtggg 19976578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 52833086 - 52833135
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 144  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  52833086 caggtagcctagtgtctagaaattcacttttaaagtgaataaatgggatg 52833135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 35111753 - 35111718
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  35111753 gtggctagaaattcacttttaaagtgaataagtggg 35111718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 2044944 - 2044982
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaa 133  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2044944 caggtagcctagtggctagaaattcacttttaaagtgaa 2044982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 29106848 - 29106894
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||    
T  29106848 caggtaacctggtggctagaaattcacttttcaagtgaataaatggg 29106894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 39238827 - 39238785
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  39238827 tagcctagcggctagaaattcacttttaaagtgaataagtggg 39238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 19516479 - 19516511
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagt 138  Q
    |||||||||||||||||||||||||||||||||    
T  19516479 gtggctagaaattcacttttaaagtgaataagt 19516511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 12675734 - 12675768
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtgg 140  Q
    |||| ||||||||||||||||||||||||||||||    
T  12675734 gtggttagaaattcacttttaaagtgaataagtgg 12675768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 29491580 - 29491539
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  29491580 tagcctagtggctagaaattcac-tttaaagtgaataagtggg 29491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 38021353 - 38021321
Alignment:
Q  109 gctagaaattcacttttaaagtgaataagtggg 141  Q
    |||| ||||||||||||||||||||||||||||    
T  38021353 gctaaaaattcacttttaaagtgaataagtggg 38021321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 2800134 - 2800088
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2800134 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 2800088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 35253804 - 35253850
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  35253804 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 35253850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 1588882 - 1588836
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  1588882 caggtagcatagtggctagaaattcacttttaaagtgaataagtggg 1588836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 10292467 - 10292421
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  10292467 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 10292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 31129417 - 31129371
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  31129417 caggtagcctagtggctaaaaattcacttttaaagtgaataagtggg 31129371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 38790552 - 38790598
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  38790552 caggtagcctagtgcctagaaattcacttttaaagtgaataagtggg 38790598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 18009695 - 18009739
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 139  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  18009695 caggtagcctaatggctagaaattcacttttaaagtgaataagtg 18009739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 35301143 - 35301186
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagt 138  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  35301143 caggtagtctagtggctagaaattcacttttaaagtgaataagt 35301186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 2696648 - 2696602
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||    
T  2696648 caggtagcctagtggtcagaaattcacttttaaagtgaataagtggg 2696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 10310385 - 10310351
Alignment:
Q  107 tggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||||||||    
T  10310385 tggctagaaattcacttttaaagtgaataagtggg 10310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 7314844 - 7314802
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  7314844 tagcctagtgactaggaattcacttttaaagtgaataagtggg 7314802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 14981682 - 14981728
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14981682 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 14981728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 29284233 - 29284187
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  29284233 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 29284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 24470371 - 24470419
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggat 143  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  24470371 caggtagcctattggctagaaattcacttttaaagtgaataagtgggat 24470419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 9064981 - 9064935
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9064981 caggtagcctagtggctagaaattcacttttaaagtaaataagtggg 9064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 33628925 - 33628967
Alignment:
Q  99 tagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  33628925 tagcctagtggctagaaattcacttttaaagtgaataagtggg 33628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 11636801 - 11636755
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| |||| |||||||||||||||||| |||| |||||||    
T  11636801 caggtagcctagtggttagaaattcacttttaaaatgaaaaagtggg 11636755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 8690329 - 8690283
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  8690329 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 8690283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 9693077 - 9693031
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9693077 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 9693031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 14149908 - 14149862
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14149908 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 14149862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 28520711 - 28520757
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  28520711 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 28520757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 48968190 - 48968236
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  48968190 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 48968236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 15640423 - 15640469
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  15640423 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 15640469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 52031322 - 52031276
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  52031322 caggtagcatagtggctagaaattcacttttaaagtgaataagtggg 52031276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 53815811 - 53815765
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  53815811 caggtagcctagtggctagaaattcacttttatagtgaataagtggg 53815765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 36954252 - 36954206
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||    
T  36954252 caggtagcctagtagctagaaattcacttttaaagtgaataaatggg 36954206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 5909763 - 5909812
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 144  Q
    |||||||| | |||| |||||||||| |||||||||||||||||||||||    
T  5909763 caggtagcttagtggttagaaattcatttttaaagtgaataagtgggatg 5909812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 46799520 - 46799476
Alignment:
Q  97 ggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||    
T  46799520 ggtagtctagtggctagaaattcacttttaaagtgaataaatggg 46799476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 46799611 - 46799569
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataag 137  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  46799611 caggtagtctagtggttagaaattcacttttaaagtgaataag 46799569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 27296937 - 27296896
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataa 136  Q
    ||||||| || ||||||||||||| |||||||||||||||||    
T  27296937 caggtagtctagtggctagaaatttacttttaaagtgaataa 27296896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 29269355 - 29269412
Alignment:
Q  144 gaatcccggcccctacatatagtaatgcattgt-----aactgagctatgctcacggg 196  Q
    ||||||| ||||||||||||| |||||||||||     ||||||||||||||||||||    
T  29269355 gaatcccagcccctacatataataatgcattgtccaccaactgagctatgctcacggg 29269412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 40150572 - 40150544
Alignment:
Q  111 tagaaattcacttttaaagtgaataagtg 139  Q
    |||||||||||||||||||||||||||||    
T  40150572 tagaaattcacttttaaagtgaataagtg 40150544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 42411436 - 42411480
Alignment:
Q  98 gtagcctggtggctagaaattcac-ttttaaagtgaataagtggg 141  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  42411436 gtagcctagtggctagaaattcactttttaaagtaaataagtggg 42411480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 52330907 - 52330935
Alignment:
Q  113 gaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||    
T  52330907 gaaattcacttttaaagtgaataagtggg 52330935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 27183661 - 27183707
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27183661 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 27183707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 38555008 - 38555052
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 139  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38555008 caggtagtctggtggctagaaattcacttttaaagtgaataagtg 38555052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 9625098 - 9625052
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  9625098 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 9625052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 32453503 - 32453549
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  32453503 caggtagcctagtgactagaaattcacttttaaagtgaataagtggg 32453549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 36476474 - 36476428
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  36476474 caggtagcctagtggctaggaattcacttttaaagtgaataagtggg 36476428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 52030236 - 52030193
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagt 138  Q
    |||||||||| ||||||| |||||||||||||||||||||||||    
T  52030236 caggtagcctagtggctaaaaattcacttttaaagtgaataagt 52030193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 7448343 - 7448389
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||    
T  7448343 caggtagtctagtggctagaaattcacttttgaagtgaataagtggg 7448389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 7456485 - 7456531
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||    
T  7456485 caggtagtctagtggctagaaattcacttttgaagtgaataagtggg 7456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 10959248 - 10959202
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  10959248 caggtagtctagtgactagaaattcacttttaaagtgaataagtggg 10959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 24559504 - 24559458
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||    
T  24559504 caggtaacctagtggttagaaattcacttttaaagtgaataagtggg 24559458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 42823966 - 42824008
Alignment:
Q  96 aggtagcctggtggctagaaattcacttttaaagtgaataagt 138  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  42823966 aggtagtctagtggctagaaattcacttttaaagtgaataagt 42824008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 14868799 - 14868754
Alignment:
Q  96 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||    
T  14868799 aggtaacctagtggctagaatttcacttttaaagtgaataagtggg 14868754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 44671568 - 44671535
Alignment:
Q  111 tagaaattcacttttaaagtgaataagtgggatg 144  Q
    ||||||||||||||||||||||||||||||||||    
T  44671568 tagaaattcacttttaaagtgaataagtgggatg 44671535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 24136733 - 24136778
Alignment:
Q  98 gtagcctggtggctagaaattcac--ttttaaagtgaataagtggg 141  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24136733 gtagcctagtggctagaaattcacctttttaaagtgaataagtggg 24136778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 45118756 - 45118712
Alignment:
Q  98 gtagcctggtggctagaaattca-cttttaaagtgaataagtggg 141  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||    
T  45118756 gtagcctagtggctagaaattcacctcttaaagtgaataagtggg 45118712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 43871068 - 43871022
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  43871068 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 43871022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 29035088 - 29035045
Alignment:
Q  98 gtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  29035088 gtagcctagtggctagaaattcacttttaaagtgaataagtggg 29035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 34034465 - 34034419
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  34034465 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 34034419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 2304405 - 2304359
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||    
T  2304405 caggtagcctagtggttagaaattcacttttaaagtaaataagtggg 2304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 44187808 - 44187773
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44187808 gtggctaaaaattcacttttaaagtgaataagtggg 44187773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 32527073 - 32527103
Alignment:
Q  111 tagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||||    
T  32527073 tagaaattcacttttaaagtgaataagtggg 32527103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 36106924 - 36106894
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataa 136  Q
    |||||||||||||||||||||||||||||||    
T  36106924 gtggctagaaattcacttttaaagtgaataa 36106894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 4789 - 4832
Alignment:
Q  98 gtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  4789 gtagcctagtggctagaaattcacttttaaagtgaataagtggg 4832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 24397060 - 24397017
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagt 138  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  24397060 caggtagcctagtggctagaaattcacttttaaagtgaataagt 24397017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 31475821 - 31475866
Alignment:
Q  96 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  31475821 aggtagtctagtggctagaaattcacttttaaagtgaataagtggg 31475866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 41139199 - 41139158
Alignment:
Q  98 gtagcctggtggctagaaattcacttttaaagtgaataagtg 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  41139199 gtagcctagtggctagaaattcacttttaaagtgaataagtg 41139158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 14818356 - 14818391
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  14818356 gtggctagaaattcacttttaaagtgaataagtggg 14818391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 15265354 - 15265389
Alignment:
Q  106 gtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  15265354 gtggctagaaattcacttttaaagtgaataagtggg 15265389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 19126836 - 19126806
Alignment:
Q  111 tagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||||||    
T  19126836 tagaaattcacttttaaagtgaataagtggg 19126806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 41417267 - 41417301
Alignment:
Q  107 tggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||| ||||||||||||||||||||||||||||    
T  41417267 tggctaaaaattcacttttaaagtgaataagtggg 41417301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 47635164 - 47635124
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataa 136  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  47635164 caggtagcctagtggctagaaattca-ttttaaagtgaataa 47635124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 7191 - 7145
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  7191 caggtagcctagtggctagaaattcacttttaaagtgaataaatggg 7145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 21963 - 21918
Alignment:
Q  95 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 141  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||    
T  21963 caggtagtctagtggctagaaattca-ttttaaagtgaataagtggg 21918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 12666 - 12634
Alignment:
Q  109 gctagaaattcacttttaaagtgaataagtggg 141  Q
    |||||||||||||||||||||||||||| ||||    
T  12666 gctagaaattcacttttaaagtgaataaatggg 12634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University