View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_17 (Length: 281)
Name: NF13172_low_17
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 46766016 - 46765765
Alignment:
| Q |
19 |
tataagggatagaaaaggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatat |
118 |
Q |
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| T |
46766016 |
tataagggatagaaaaggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatat |
46765917 |
T |
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| Q |
119 |
ggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaa |
218 |
Q |
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| T |
46765916 |
ggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaa |
46765817 |
T |
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| Q |
219 |
caggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatg |
270 |
Q |
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| T |
46765816 |
caggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatg |
46765765 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 261
Target Start/End: Complemental strand, 1086291 - 1086112
Alignment:
| Q |
82 |
ttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccg |
181 |
Q |
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| T |
1086291 |
ttagaaaaagtttagctcagtgtatccgtgagaatatggtaaaagttcctccacttggattctggaacgagaacagctcatacttttcttcaattttcca |
1086192 |
T |
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| Q |
182 |
tgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataaga |
261 |
Q |
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| T |
1086191 |
tggtttgactcaacctcggcccaaaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaaga |
1086112 |
T |
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