View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_2 (Length: 624)
Name: NF13172_low_2
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 38 - 605
Target Start/End: Original strand, 24990922 - 24991489
Alignment:
| Q |
38 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
137 |
Q |
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| T |
24990922 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
24991021 |
T |
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| Q |
138 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
237 |
Q |
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| T |
24991022 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
24991121 |
T |
|
| Q |
238 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttt |
337 |
Q |
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| T |
24991122 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcattttaatgtgcaaataattatattcttctattatttt |
24991221 |
T |
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| Q |
338 |
taggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtg |
437 |
Q |
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| T |
24991222 |
taggcgataaagttggataatttcatcactcacgagcttccctttgatgagataaaccaagccttcaatcttttgattgccgggaagtcattgagatgtg |
24991321 |
T |
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| Q |
438 |
ttctaacactctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagtacatata |
537 |
Q |
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| T |
24991322 |
ttcttacactctaagagaagacatacttttttttcttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagtatatata |
24991421 |
T |
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| Q |
538 |
aatataaatatgtaataaagtttgtgaacagttattacacagcattatcttactgtgaagtgtgttac |
605 |
Q |
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| T |
24991422 |
aatataaatatgtaataaagtttgtgaacagttattacacagcattatcttactgtgaagtgtgttac |
24991489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 48 - 601
Target Start/End: Original strand, 24994607 - 24995151
Alignment:
| Q |
48 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaagttgcttccc |
147 |
Q |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatgcatcaccaaagttacttcct |
24994704 |
T |
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| Q |
148 |
atccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
247 |
Q |
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| T |
24994705 |
ctccacccaatggagctctttgatggccgcaaaatcgaaggatcggtctttggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
24994804 |
T |
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| Q |
248 |
tgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttttaggtgataa |
347 |
Q |
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| T |
24994805 |
tgaaaggggtaa-tgatcatcacta---gcaaaaactcaaattatgcgatgcgttttagtgtccaagtaattatattcttctattatttttaggcgataa |
24994900 |
T |
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| Q |
348 |
agctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtgttctaacact |
447 |
Q |
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| T |
24994901 |
agttggatgatttcatcactcacgaacttccctttgacgagataaacaaagccttcgatcttttgattgccgggaagtcactgagatgtcttctgacact |
24995000 |
T |
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| Q |
448 |
ctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagtacatataaatataaata |
547 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||| ||||| | |||||||| || |||||||||||| |
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| T |
24995001 |
ctaagagaagac-----gctgctttttcatttagatagagagcactctcaagtattatgatatctgaattctttactagaagtatatctaaatataaata |
24995095 |
T |
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| Q |
548 |
tg--taataaagtttgtgaacagttattacacagcattatcttactgtgaagtgtg |
601 |
Q |
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|| ||||| ||| |||||||| |||| | ||||||||||||||||||||||| |
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| T |
24995096 |
tgtataatagtgttcttgaacagtacttacgcggcattatcttactgtgaagtgtg |
24995151 |
T |
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