View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_21 (Length: 251)
Name: NF13172_low_21
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 2288001 - 2288234
Alignment:
| Q |
15 |
agtttagaaaaaagtgaattttaatggtagagatcatgaattatgagtcatgaagggaaaaagttgagagaattcattattcctattagatgatttacac |
114 |
Q |
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| T |
2288001 |
agtttagaaaaaagtgaattttaatggtatagatcatgaatcatgagtcatgaagggaaaaagttgagagaattcattattcctattagatgatttacac |
2288100 |
T |
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| Q |
115 |
ttgccaaaaatcaatcgtcattaggagttacactcatcatcttcaaagtaaacaaaaaagatatcagatttaaagcagtcattttttcctacattcatgt |
214 |
Q |
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| T |
2288101 |
ttgccaaaaatcaatcgtcattaggagttacac---tcatcttcaaagtaaataaaaaagatatcagatttaaagtagtcattttttcctacattcacgt |
2288197 |
T |
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| Q |
215 |
gatcaagacattacggtccagaagaaaaatacttaat |
251 |
Q |
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| T |
2288198 |
gatcaagacattacggtccagaagaaaaatacttaat |
2288234 |
T |
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