View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_24 (Length: 239)
Name: NF13172_low_24
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 2288333 - 2288550
Alignment:
| Q |
5 |
accaaatctttatccaacacaaaatgaaatattttgctcaacccaaccaagtcatacatgtacataattcttgtattttcaaaacgaaattcgtgaataa |
104 |
Q |
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| T |
2288333 |
accaaatcttgatccaacacaaaatgaaatattttgctcaacccaaccaagtcatacatgtacataattcttgtattttcaaaacgaaattcctgaataa |
2288432 |
T |
|
| Q |
105 |
aaattggaaagaatattgcacaaatacaaagctaaaaccaattaaatgtaatatgggtcgatagttagtccttgttactggagtgggagaggataatact |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288433 |
aaattggaaagaatattgcacaaatacaaagctaaaaccaattaaatgtaatatgggtcgatagttagtccttgttactggagtgggagaggataataca |
2288532 |
T |
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| Q |
205 |
cactcatattcatctcac |
222 |
Q |
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|||||||||||||||||| |
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| T |
2288533 |
cactcatattcatctcac |
2288550 |
T |
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