View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_25 (Length: 230)
Name: NF13172_low_25
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26785851 - 26786070
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785851 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
26785950 |
T |
|
| Q |
101 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785951 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26786050 |
T |
|
| Q |
201 |
actttatgttcacacctttg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26786051 |
actttatgttcacacctttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26822492 - 26822711
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||| || |||||||||||||||||||||||| |
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| T |
26822492 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatcagca |
26822591 |
T |
|
| Q |
101 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822592 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26822691 |
T |
|
| Q |
201 |
actttatgttcacacctttg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
26822692 |
actttatgttcacacctttg |
26822711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26791591 - 26791810
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| || ||| ||||||||||||||||||||||||||| |
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| T |
26791591 |
accaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagca |
26791690 |
T |
|
| Q |
101 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26791691 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26791790 |
T |
|
| Q |
201 |
actttatgttcacacctttg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26791791 |
actttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26832569 - 26832795
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||||||| |
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|
| T |
26832569 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
26832668 |
T |
|
| Q |
101 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |
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| T |
26832669 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
26832768 |
T |
|
| Q |
201 |
actttatgttcacacctttgcttctcc |
227 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
26832769 |
actttatattcacacctttgcttctcc |
26832795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 41546355 - 41546211
Alignment:
| Q |
83 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
41546355 |
tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
41546256 |
T |
|
| Q |
183 |
tgttgtccctaacttcatactttatgttcacacctttgcttctcc |
227 |
Q |
| |
|
| || ||||| | |||||||||||||| | ||||| ||||||| |
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| T |
41546255 |
tattttcccttatctcatactttatgtttatgccttttcttctcc |
41546211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 41917588 - 41917439
Alignment:
| Q |
74 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
173 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
41917588 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
41917489 |
T |
|
| Q |
174 |
acccatttctgttgtccctaacttcatactttatgttcacacctttgctt |
223 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41917488 |
atccatttctattgtccctaacttcatactttatattcactcctttgctt |
41917439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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