View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_26 (Length: 220)
Name: NF13172_low_26
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 48245050 - 48244862
Alignment:
| Q |
18 |
gtttctataacataaggtcaaggaaaatggagatgatacctcttattgagggttccattctctggattactgaaaggcaaacattgcttggtttaattga |
117 |
Q |
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| T |
48245050 |
gtttctatagcataaggtcaaggaaaatggagatgatacctcttattgagggttccattctctggattactgaaaggcaaacatcgcttggtttaattga |
48244951 |
T |
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| Q |
118 |
tgagatctttggacaagttaaaaatccttattatgctgtgagatacaactctgaaaaagggatccgtgagggaactttgatttcctttg |
206 |
Q |
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| T |
48244950 |
tgagatctttggacaagttaaaaatccttattatgctgtgagatacaactctgaaaaagggatccgtgagggaactttgatttcctttg |
48244862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 48241146 - 48241102
Alignment:
| Q |
17 |
agtttctataacataaggtcaaggaaaatggagatgatacctctt |
61 |
Q |
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| T |
48241146 |
agtttctataacataaggtcaaggaaaatggagatgatgcctctt |
48241102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 48241100 - 48241025
Alignment:
| Q |
143 |
ccttattatgctgtgagatacaactctgaaa------------aagggatccgtgagggaactttgatttcctttg |
206 |
Q |
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| T |
48241100 |
ccttattatgctgtgagatacaactctgaaaaagaagtgccagaagggatccgtgagggaactttgatttcctttg |
48241025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 38172565 - 38172445
Alignment:
| Q |
56 |
cctcttattgagggttccattctctggattactgaaaggcaaacattgcttggtttaattgatgagatctttggacaagttaaaaatccttattatgctg |
155 |
Q |
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| T |
38172565 |
cctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttggtcaagtaaaaaatccttattatgttg |
38172466 |
T |
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| Q |
156 |
tgagatacaactctgaaaaag |
176 |
Q |
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| T |
38172465 |
tgcgatacaattctgaaaaag |
38172445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 46494276 - 46494248
Alignment:
| Q |
29 |
ataaggtcaaggaaaatggagatgatacc |
57 |
Q |
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| T |
46494276 |
ataaggtcaaggaaaatggagatgatacc |
46494248 |
T |
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