View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_3 (Length: 617)
Name: NF13172_low_3
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 26 - 427
Target Start/End: Complemental strand, 18102018 - 18101617
Alignment:
| Q |
26 |
atatgttgtaaagtgatgttgtaaggaattgagacaactatgaattattgaacttgttcaatacaagtgagtatcatgaggagctcaatatgtctattta |
125 |
Q |
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| T |
18102018 |
atatgttgtaaagtgatgttgtaaagaattgagacaactatgaattattgaacttgttcaatacaagtgagtatcatgaggagctcaatatgtctattta |
18101919 |
T |
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| Q |
126 |
tatatgatcaacttgtacttttgtttggtacatccggccggcaaataaagtttttaagtggttaggtagatcaaatataaacttttctaattaactttaa |
225 |
Q |
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| T |
18101918 |
tatatgaccaacttgtacttttgtttggtagatccggccggcaaattaagtttttaagtggttaggtagatcaaatataaacttttctaattaactttaa |
18101819 |
T |
|
| Q |
226 |
aataagtgtagtttggtttcatagaatatactcatccatcgataaggacgtggattcaactttcattaccggtgtaaagttctctttgataaatgattcg |
325 |
Q |
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| T |
18101818 |
aataaatgtagtttggtttcatagaatatactcatccatcgataaggacgtggattcaactttcattaccggtgtaaagatctctttgataaatgattcg |
18101719 |
T |
|
| Q |
326 |
taagtaaatatgtaaatgctctttctctttgatataaatacgtttttgaactttgaagtctgtcttaactctgatgagtcttcggaacccaactcatcta |
425 |
Q |
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| T |
18101718 |
taagtaaatatgtaaatgctctttctctttgatataaatacgtttttgaactttgaagtctgtcttaactctgatgagtcttcggaacccaactcatcta |
18101619 |
T |
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| Q |
426 |
aa |
427 |
Q |
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| T |
18101618 |
aa |
18101617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 425 - 598
Target Start/End: Complemental strand, 18100976 - 18100803
Alignment:
| Q |
425 |
aaattatcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaaaagccaacggtgaagtagtgtatttggaaatcttttggaga |
524 |
Q |
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| T |
18100976 |
aaattatcaagactccagattacaagtggactttgatgtagttagtgattgttaatcgaaagccaacggtgaagtagtgtatttggaaatcttttggaga |
18100877 |
T |
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| Q |
525 |
tacttcaaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaa |
598 |
Q |
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| T |
18100876 |
tacttcaaatgtatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaa |
18100803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 425 - 598
Target Start/End: Complemental strand, 18086180 - 18086007
Alignment:
| Q |
425 |
aaattatcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaaaagccaacggtgaagtagtgtatttggaaatcttttggaga |
524 |
Q |
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| T |
18086180 |
aaattatcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaagagccaatggtgaagtagtgtgtttggaaacctgttggaga |
18086081 |
T |
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| Q |
525 |
tacttcaaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaa |
598 |
Q |
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| T |
18086080 |
tacttcaaatgtatgtttgaggtctttccaacgaattttcaaacatgcactgaatcatgattttctgattttaa |
18086007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 18091903 - 18091824
Alignment:
| Q |
54 |
ttgagacaactatgaattattgaacttgttcaatacaagtgagtatcatgaggagctcaatatgtctatttatatatgat |
133 |
Q |
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| T |
18091903 |
ttgagagaactatgagctattgaacttgttcaatacaagtgagtttaatgaggagctcaatatgtctatttatatatgat |
18091824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 590
Target Start/End: Complemental strand, 18116480 - 18116396
Alignment:
| Q |
506 |
tttggaaatcttttggagatacttcaaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttct |
590 |
Q |
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| T |
18116480 |
tttggaaatctattggagatacttcaaatgtatctttgaagtctctctaatgaattttcaaacatgcgctgaatcatgattttct |
18116396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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