View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_4 (Length: 574)
Name: NF13172_low_4
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 288 - 574
Target Start/End: Original strand, 26785569 - 26785854
Alignment:
| Q |
288 |
caaatatgagataaaaaatctaacattttcaaaacaaataaaatctacactgcggtgtagattttattgtttcacttttaagtagctatatgtaattttg |
387 |
Q |
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| T |
26785569 |
caaatatgagatacaaaatctaacattttcaaaacaaataaaatctacaccgcagtgtagattttattgtttcacttttaagtagctatgtgtaattttg |
26785668 |
T |
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| Q |
388 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatattttaaaacttcaacaaaatcacaattaatgttaattcaagcatg |
487 |
Q |
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| T |
26785669 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatcttttaaaacttcaacaaaatcagaattaatgttaattcaagcatg |
26785768 |
T |
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| Q |
488 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaattaagggaaaaagagaaattacca |
574 |
Q |
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| T |
26785769 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaatt-agggaaaaagagtaattacca |
26785854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 26785335 - 26785512
Alignment:
| Q |
18 |
tgaagaactgaagacaattgaaaaaatgaaacttggtacttgactaagttattatagaggaagaagaaaactannnnnnngtaggttagaggatcaatta |
117 |
Q |
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| T |
26785335 |
tgaagaactgaagacaattgaaaaaatgaaacttggtacttgactaagttatta--gaggaagaagaaaactatttttttgtaggttagaggatcaatta |
26785432 |
T |
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| Q |
118 |
gctgatatcatgacaaagctcttgaaaatagagaaattcagagagatgagaacattcttaattgtagatcctttaccgga |
197 |
Q |
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| T |
26785433 |
gctgatatcatgataaagctcttgaaaatagagaaattcagagagatgagaacattcttaattgtagatcctttaccgga |
26785512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 26785636 - 26785605
Alignment:
| Q |
324 |
aataaaatctacactgcggtgtagattttatt |
355 |
Q |
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| T |
26785636 |
aataaaatctacactgcggtgtagattttatt |
26785605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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