View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13172_low_5 (Length: 484)

Name: NF13172_low_5
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13172_low_5
NF13172_low_5
[»] chr5 (1 HSPs)
chr5 (21-431)||(34936656-34937080)
[»] chr1 (2 HSPs)
chr1 (47-373)||(17404622-17404949)
chr1 (154-368)||(32730188-32730402)
[»] chr7 (3 HSPs)
chr7 (277-368)||(18132650-18132741)
chr7 (277-368)||(18144437-18144528)
chr7 (375-416)||(29802043-29802084)
[»] chr2 (1 HSPs)
chr2 (380-419)||(20213787-20213826)
[»] chr3 (1 HSPs)
chr3 (375-419)||(53505105-53505149)
[»] chr8 (1 HSPs)
chr8 (375-416)||(18008986-18009027)
[»] chr6 (1 HSPs)
chr6 (375-419)||(2013467-2013511)
[»] chr4 (1 HSPs)
chr4 (375-419)||(54846172-54846216)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Complemental strand, 34937080 - 34936656
Alignment:
Q  21 gaggcacattaggagcaaccgaagatatacctagccaagttcgcacattgtgccaaacactgtcagaaatcccacacctataaaaatatgatatgccgtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  34937080 gaggcacattaggagcaaccgaagatatacctagccaagttcgcacattgtaccaaacactgtcagaaatcccacacctataaaaagatgatatgccgtt 34936981  T
Q  121 tcggaattaccacagccggctgcacaccccaggtcattagattgaagaatactccttcgcgccaattcgtctttagtaggtaatctattgtgaaggagaa 220  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  34936980 tcggaattaccacagtcggctgcacacgccaggtcattagattgaagaatactcctttgcgccaattcgtctttagtaggtaatctattgcgaaggagaa 34936881  T
Q  221 gccacatgaacagagataccttcgaagagatatgcttgtgcctaacgtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgata 320  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  34936880 gccacacgaacagagataccttcgaagagatatgcttgtgcctaacgtcattaacaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgata 34936781  T
Q  321 gacagctcgcaccgagtaacgatgattgggatcaagcaaccacttccacttg--------------tacaaagcaatgttatgtaacaaagcagaacact 406  Q
    |||| ||||||| ||||||| |||||| ||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||    
T  34936780 gacacctcgcactgagtaacaatgattaggatcaagcaaccacttccacttgtcaagaacatgctctacaaagcaatgttatgtaacaaagcagaacact 34936681  T
Q  407 ccctcacactctcacacacccccac 431  Q
    ||||||||||||||||| |||||||    
T  34936680 ccctcacactctcacacccccccac 34936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 47 - 373
Target Start/End: Complemental strand, 17404949 - 17404622
Alignment:
Q  47 atacctagccaagttcgcacattgtgccaaacactgtcagaaatcccaca-cctataaaaatatgatatgccgtttcggaattaccacagccggctgcac 145  Q
    |||||||||||| |  ||||||  |||||||||| |||| ||||| |||| ||||  ||||  |||| || |||||| ||| |||| ||| | ||| |||    
T  17404949 atacctagccaaatctgcacatgatgccaaacaccgtcaaaaatctcacagcctaggaaaaggtgatgtgtcgtttctgaagtaccgcagtctgctacac 17404850  T
Q  146 accccaggtcattagattgaagaatactccttcgcgccaattcgtctttagtaggtaatctattgtgaaggagaagccacatgaacagagataccttcga 245  Q
    |  | || | ||||||||||||||  |||||||| ||||| | ||||||| | |||||||||||| |||||||| | |||| ||||| | | || || ||    
T  17404849 atgcaagattattagattgaagaaggctccttcgggccaaattgtctttatttggtaatctattgcgaaggagacgtcacacgaacaaataaactttaga 17404750  T
Q  246 agagatatgcttgtgcctaacgtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatga 345  Q
    |   |||| ||| || | || ||||||||| ||||||||||||| | || |||| ||||||||||||||| |||| ||  ||||||||||||||| ||||    
T  17404749 atgaatatacttatgtcaaatgtcatcagcgagattcctaaccataggtacatctgtcgtagtaaaaaagtgatatacgcctcgcaccgagtaaccatga 17404650  T
Q  346 ttgggatcaagcaaccacttccacttgt 373  Q
        ||||||||||||| ||||||||||    
T  17404649 aaaagatcaagcaaccatttccacttgt 17404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 368
Target Start/End: Complemental strand, 32730402 - 32730188
Alignment:
Q  154 tcattagattgaagaatactccttcgcgccaattcgtctttagtaggtaatctattgtgaaggagaagccacatgaacagagataccttcgaagagatat 253  Q
    |||||||  |||||||| |||||||| | ||| | |||||| || |||||||| ||  |||||||  |||||   ||||  || ||||||||||  ||||    
T  32730402 tcattagtgtgaagaatgctccttcgtgacaaattgtcttttgtcggtaatctgttacgaaggagtcgccacgcaaacaaggaaaccttcgaaggaatat 32730303  T
Q  254 gcttgtgcctaacgtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatc 353  Q
     ||| |||| |||||  ||||   |||||||||||||  ||||||| || ||||||||||||||||| ||| ||||||||||||||| |||| | |||||    
T  32730302 tcttatgccaaacgtggtcagtttgattcctaaccacgggttcatcagttgtagtaaaaaagcgatatacacctcgcaccgagtaaccatgaataggatc 32730203  T
Q  354 aagcaaccacttcca 368  Q
     |||||||| |||||    
T  32730202 gagcaaccatttcca 32730188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 18132650 - 18132741
Alignment:
Q  277 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 368  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18132650 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 18144437 - 18144528
Alignment:
Q  277 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 368  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18144437 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 29802084 - 29802043
Alignment:
Q  375 caaagcaatgttatgtaacaaagcagaacactccctcacact 416  Q
    |||| ||||||||| |||||||||| ||||||||||||||||    
T  29802084 caaaacaatgttatttaacaaagcataacactccctcacact 29802043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 20213787 - 20213826
Alignment:
Q  380 caatgttatgtaacaaagcagaacactccctcacactctc 419  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  20213787 caatgttatgtaacaaagcagaacactccctcagactctc 20213826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 53505149 - 53505105
Alignment:
Q  375 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 419  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||    
T  53505149 caaaacaatgttaagtaacaaagcacaacactccctcacactctc 53505105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 18009027 - 18008986
Alignment:
Q  375 caaagcaatgttatgtaacaaagcagaacactccctcacact 416  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  18009027 caaaacaatgttatgtaacaaagcagagcactcccgcacact 18008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 2013511 - 2013467
Alignment:
Q  375 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 419  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  2013511 caaaacaacgttatgtaacaaaacagaacactccctcatactctc 2013467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 54846172 - 54846216
Alignment:
Q  375 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 419  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||||    
T  54846172 caaaacaatgttatgtagtaaaacagaacactccctcacactctc 54846216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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