View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13172_low_7 (Length: 425)

Name: NF13172_low_7
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13172_low_7
NF13172_low_7
[»] chr5 (3 HSPs)
chr5 (13-407)||(6586545-6586939)
chr5 (74-112)||(14956647-14956685)
chr5 (20-130)||(22532590-22532700)
[»] chr6 (7 HSPs)
chr6 (20-113)||(1912440-1912533)
chr6 (20-106)||(33532432-33532518)
chr6 (60-121)||(10393980-10394041)
chr6 (81-121)||(31696628-31696668)
chr6 (82-121)||(14397555-14397594)
chr6 (36-105)||(30532119-30532188)
chr6 (81-121)||(3204147-3204187)
[»] chr3 (5 HSPs)
chr3 (13-106)||(38884017-38884110)
chr3 (83-121)||(21866678-21866716)
chr3 (21-98)||(54838617-54838694)
chr3 (20-111)||(5033365-5033456)
chr3 (61-121)||(50061804-50061863)
[»] chr7 (10 HSPs)
chr7 (75-118)||(37684134-37684177)
chr7 (81-130)||(29234273-29234322)
chr7 (34-105)||(96808-96879)
chr7 (81-121)||(23117285-23117325)
chr7 (72-120)||(28726984-28727032)
chr7 (74-121)||(1668341-1668388)
chr7 (72-118)||(21173825-21173871)
chr7 (20-121)||(30900038-30900139)
chr7 (29-106)||(48517386-48517463)
chr7 (14-54)||(2219518-2219558)
[»] chr2 (3 HSPs)
chr2 (69-118)||(11927224-11927273)
chr2 (37-106)||(29384589-29384658)
chr2 (81-121)||(35849475-35849515)
[»] chr1 (6 HSPs)
chr1 (14-121)||(15255144-15255251)
chr1 (52-107)||(46937627-46937682)
chr1 (74-106)||(3335232-3335264)
chr1 (60-104)||(23409364-23409408)
chr1 (72-111)||(35426558-35426597)
chr1 (81-121)||(32029766-32029806)
[»] chr4 (3 HSPs)
chr4 (23-121)||(30617195-30617293)
chr4 (45-121)||(33761772-33761848)
chr4 (20-129)||(3301544-3301653)
[»] chr8 (3 HSPs)
chr8 (20-121)||(42822619-42822720)
chr8 (20-113)||(10354756-10354849)
chr8 (80-112)||(23400695-23400727)
[»] scaffold0223 (1 HSPs)
scaffold0223 (72-121)||(10604-10653)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 6586545 - 6586939
Alignment:
Q  13 aatatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6586545 aatatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatc 6586644  T
Q  113 cacaattgaatacactgactcgtacaacactcattttgagaacatggcaccaacccctagccgaaactttcattccaactaaacataaaaaggaacacag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6586645 cacaattgaatacactgactcgtacaacactcattttgagaacatggcaccaacccctagccgaaactttcattccaactaaacataaaaaggaacacag 6586744  T
Q  213 tttgtaccaaaattgtcacgtttaacaatgatagtgatcaactggcgatgaaaggccttattgaatattgattaaatacnnnnnnnnnnnnngatagtag 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||    
T  6586745 ttggtaccaaaattgtcacgtttaacaatgatagtgatcaactggcgatgaaaggccttattgaatattgattaaatattttttagttttttgatagtag 6586844  T
Q  313 attgatggatcaaaggtgaaatgcatatagttcaactgctcattgtcttctcttagaatctttttcctaaacaaacaaaatgttcaacttgtata 407  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6586845 attgatggatcaaaggtgaaatgcatatagttcaatagctcattgtcttctcttagaatctttttcctaaacaaacaaaatgttcaacttgtata 6586939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 14956685 - 14956647
Alignment:
Q  74 gcatagaggaatttgaacaaaccgctattttccgcaatc 112  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14956685 gcatagaggaatttgaacaaaccgttattttccgcaatc 14956647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 22532590 - 22532700
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaatt 119  Q
    |||| ||| |||||||||||| || || |||||||||| | |||||| |||||||||||| ||| ||| ||||  ||  |||||||||| |||| | |||    
T  22532590 tattaagtacaaaatattgtcgaatagaggttatagtggcactatagcactattgcatagcggagttttaacagtccattattttccgctatccgcgatt 22532689  T
Q  120 gaatacactga 130  Q
    ||| |||||||    
T  22532690 gaaaacactga 22532700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 1912533 - 1912440
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatcc 113  Q
    |||||||| |||| |||||||||| ||||  ||||||| |||||||| ||  |||||||| |||||||||||||||| ||||||||||| ||||    
T  1912533 tatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcgatcc 1912440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 33532518 - 33532432
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttcc 106  Q
    |||||||| || ||| |||||||||||| | ||||||  |||||||| ||| |||  |||  |||||||||||||||||||||||||    
T  33532518 tatttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctattttcc 33532432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 10394041 - 10393980
Alignment:
Q  60 gctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||| ||| || ||| | ||||||| ||||||||||||||||||||||||| |||||||    
T  10394041 gctatagcactgttccattgcggaatttaaacaaaccgctattttccgcaatccgcaattga 10393980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 31696668 - 31696628
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  31696668 ggaatttgaacaaaccgctattttctgcaatccacgattga 31696628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 14397594 - 14397555
Alignment:
Q  82 gaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  14397594 gaatttgaacaaacctctattttccgcaagccacaattga 14397555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 30532188 - 30532119
Alignment:
Q  36 ttgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttc 105  Q
    |||||||| ||||||||||| | |||||||| ||| | |  |||||||||| ||||||||| ||||||||    
T  30532188 ttgtcaaatagcggttatagaggcgctatagtactgtagtgtagaggaattcgaacaaaccactattttc 30532119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 3204147 - 3204187
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  3204147 ggaattttaacaaaccaatattttccgcaatccacaattga 3204187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 38884110 - 38884017
Alignment:
Q  13 aatatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttcc 106  Q
    |||||| ||||| || ||||||||||||||| || || |||||||  ||||||| ||||||||| |||||||||| ||||  ||||||||||||    
T  38884110 aatatgctatttggtacaaaatattgtcaaatagtgggtatagtggtgctatagcactattgcacagaggaattttaacagtccgctattttcc 38884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 21866678 - 21866716
Alignment:
Q  83 aatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  21866678 aatttgaacaaaccgctattttctgcaatccacaattga 21866716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 54838617 - 54838694
Alignment:
Q  21 atttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgc 98  Q
    ||||||| |||||| |||||||| || || || | ||||||||||| ||| ||||| || ||||||||||||||||||    
T  54838617 atttagtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaaccgc 54838694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5033365 - 5033456
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaat 111  Q
    |||||||| || ||||| || |||  || ||||||||| ||||||||   | |||| ||| ||||||||||||||| |||||||||||||||    
T  5033365 tatttagtacataatatcgtgaaattgcagttatagtggcgctatagctgtgttgcgtagcggaatttgaacaaactgctattttccgcaat 5033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 50061863 - 50061804
Alignment:
Q  61 ctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    |||||| |||||||  ||| |||||||||||||||||| | |||| |||||||||||||||    
T  50061863 ctatagcactattgtgtagcggaatttgaacaaaccgc-aatttctgcaatccacaattga 50061804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 37684134 - 37684177
Alignment:
Q  75 catagaggaatttgaacaaaccgctattttccgcaatccacaat 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  37684134 catagaggaatttgaacaaaccgctattatccgcaatccacaat 37684177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 29234273 - 29234322
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattgaatacactga 130  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  29234273 ggaatttgaacaaaccgctaatttccgcaatccacaattgacaacactga 29234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 96879 - 96808
Alignment:
Q  34 tattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttc 105  Q
    |||||||||||||||| ||||||  |||||||| |||||||| ||| ||||||| |||||  ||||||||||    
T  96879 tattgtcaaacagcggctatagtagcgctatagcactattgcgtagcggaattttaacaatacgctattttc 96808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 23117325 - 23117285
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  23117325 ggaatttgaacaaaccactattttccgcaatccgcaattga 23117285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 28726984 - 28727032
Alignment:
Q  72 ttgcatagaggaatttgaacaaaccgctattttccgcaatccacaattg 120  Q
    |||||||| ||||||||||||||||||||||||  |||||| |||||||    
T  28726984 ttgcatagcggaatttgaacaaaccgctattttttgcaatctacaattg 28727032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 1668388 - 1668341
Alignment:
Q  74 gcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    |||||| |||||||||||||||||||||||||||  || |||||||||    
T  1668388 gcatagtggaatttgaacaaaccgctattttccgtgattcacaattga 1668341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 21173871 - 21173825
Alignment:
Q  72 ttgcatagaggaatttgaacaaaccgctattttccgcaatccacaat 118  Q
    |||||||| ||||||||||||| |||||||||||| | |||||||||    
T  21173871 ttgcatagtggaatttgaacaatccgctattttccacgatccacaat 21173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 30900139 - 30900038
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaatt 119  Q
    |||||||| ||||||||||| ||| || || ||| | |  ||||||| ||| || ||||| ||||||||| |||||| |||||||| ||||||  |||||    
T  30900139 tatttagtacaaaatattgtgaaatagtggctatcgcggtgctatagtactgttacatagcggaatttgagcaaaccactattttctgcaatctgcaatt 30900040  T
Q  120 ga 121  Q
    ||    
T  30900039 ga 30900038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 48517463 - 48517386
Alignment:
Q  29 caaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttcc 106  Q
    |||||| || ||||| || |||||||| | |||||||| | | ||| |||| | ||||||||||||||||||||||||    
T  48517463 caaaatgttttcaaatagtggttatagcggcgctatagcaatgttgtatagcgaaatttgaacaaaccgctattttcc 48517386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2219558 - 2219518
Alignment:
Q  14 atatggtatttagtgcaaaatattgtcaaacagcggttata 54  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  2219558 atatgctatttagtacaaaatattgtcaaatagcggttata 2219518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 11927224 - 11927273
Alignment:
Q  69 ctattgcatagaggaatttgaacaaaccgctattttccgcaatccacaat 118  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  11927224 ctattgcttagtggaatttgaacaaactgctattttccgcaatccacaat 11927273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 29384589 - 29384658
Alignment:
Q  37 tgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttcc 106  Q
    ||||||| | ||||| ||| |||||||||| ||| | |||||||||||||| || |||||||||||||||    
T  29384589 tgtcaaataacggttgtagcgccgctatagtactttcgcatagaggaatttaaataaaccgctattttcc 29384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 35849515 - 35849475
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    |||||||||||||||||||||||||| |||||  |||||||    
T  35849515 ggaatttgaacaaaccgctattttccacaatctgcaattga 35849475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 15255251 - 15255144
Alignment:
Q  14 atatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatcc 113  Q
    ||||| ||||||||||| |||||||| |||||| || ||||| | | |||||| | | ||||||||  |||||| |||||||| |||||||| || ||||    
T  15255251 atatgctatttagtgcataatattgtgaaacagtggctatagcggcactatagcaatgttgcatagcagaatttaaacaaaccactattttctgcgatcc 15255152  T
Q  114 acaattga 121  Q
    | ||||||    
T  15255151 ataattga 15255144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 46937627 - 46937682
Alignment:
Q  52 atagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccg 107  Q
    |||||| |||||||  ||| |||||||| |||||||||||||||||||||||||||    
T  46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttccg 46937682  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 3335232 - 3335264
Alignment:
Q  74 gcatagaggaatttgaacaaaccgctattttcc 106  Q
    |||||||||||||||||||||||||||||||||    
T  3335232 gcatagaggaatttgaacaaaccgctattttcc 3335264  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 23409408 - 23409364
Alignment:
Q  60 gctatagaactattgcatagaggaatttgaacaaaccgctatttt 104  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||    
T  23409408 gctatagaactattgtatagaggaatttgaacgaaccactatttt 23409364  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 35426597 - 35426558
Alignment:
Q  72 ttgcatagaggaatttgaacaaaccgctattttccgcaat 111  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  35426597 ttgcatagaggaatttgagcaaaccactattttccgcaat 35426558  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 32029806 - 32029766
Alignment:
Q  81 ggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  32029806 ggaattcgaacaaaccacaattttccgcaatccacaattga 32029766  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 30617293 - 30617195
Alignment:
Q  23 ttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||| ||||||||||| ||| || ||  |||| |  ||||||| | | |||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  30617293 ttagtacaaaatattgtgaaatagtggcaatagcgatgctatagcattgttgcgtagtggaatttgaacaaaccgctattttctgcaatccccaattga 30617195  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 33761772 - 33761848
Alignment:
Q  45 agcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||||||| || | ||||||||| |||||||| |||||||||||||||  ||||||  | | ||||||||||||    
T  33761772 agcggttatagcgcaggtatagaactgttgcatagcggaatttgaacaaactactatttcgcactatccacaattga 33761848  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 3301653 - 3301544
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaatt 119  Q
    |||||||| ||| || |||| ||| ||| | ||||||| |||||||| ||| | ||  || ||||||||||||||  ||||||||| ||||| ||| |||    
T  3301653 tatttagtacaatattttgttaaatagcagctatagtgacgctatagcactgtagcgcagtggaatttgaacaaagtgctattttctgcaattcacgatt 3301554  T
Q  120 gaatacactg 129  Q
    ||| ||||||    
T  3301553 gaaaacactg 3301544  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 42822619 - 42822720
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatccacaatt 119  Q
    |||||||  ||||||| ||| ||| || || ||||| | |||||||| ||| |||||||| ||||||||||||||| | |||||||||| |||  |||||    
T  42822619 tatttaggacaaaatactgtgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttccgctatctgcaatt 42822718  T
Q  120 ga 121  Q
    ||    
T  42822719 ga 42822720  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 10354849 - 10354756
Alignment:
Q  20 tatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgcaatcc 113  Q
    |||||||  ||||||||| | ||| | | ||||||| | | |||||| |||||||| ||| |||||||||||||||  ||||||||||| ||||    
T  10354849 tatttagcacaaaatattatgaaataacagttatagcggctctatagcactattgcgtagtggaatttgaacaaacatctattttccgcgatcc 10354756  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 23400695 - 23400727
Alignment:
Q  80 aggaatttgaacaaaccgctattttccgcaatc 112  Q
    ||||||||||||| |||||||||||||||||||    
T  23400695 aggaatttgaacataccgctattttccgcaatc 23400727  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 10653 - 10604
Alignment:
Q  72 ttgcatagaggaatttgaacaaaccgctattttccgcaatccacaattga 121  Q
    ||||||||  |||||||||||||||||||||||| || || |||||||||    
T  10653 ttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattga 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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