View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13172_low_8 (Length: 399)
Name: NF13172_low_8
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13172_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 48121086 - 48121416
Alignment:
| Q |
1 |
ttggctctcatgttcatgtctgtcattggaacttgatcgacatatgattgtggataccatgtaaacggggacctaccacctataaataaatttttcactg |
100 |
Q |
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| T |
48121086 |
ttggctctcatgttcatgtctgtcattggaacttgatcgacatatgattgtggataccatgtaaacggggacctaccacctataaataaatttttcactg |
48121185 |
T |
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| Q |
101 |
ttagtccaaaaaatgcagtgtaaacattactcctccgagctcaaatataagaaaataaaagtttatgtgtttggtataaacttggattagttgtatatag |
200 |
Q |
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| T |
48121186 |
ttagtccaaaaaatgcagtgtaaacattactcctccgagctcaaatataagaaaataaaagtttatgtgtttggtataaacttggattagttgtatatag |
48121285 |
T |
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| Q |
201 |
acnnnnnnngtttatatttgagaccataaggagtatgtggtaacattattactattcagggttcagttcaggaagaaaaatcaaaccgaactaaaccgct |
300 |
Q |
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| T |
48121286 |
actttttttgtttatatttgagaccataaggagtatgtggtaacattattactgttcagggttcagttcaggaagaaaaatcaaaccaaactaaaccgct |
48121385 |
T |
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| Q |
301 |
aaaggtaaaattgaaccaaaccgttaattgt |
331 |
Q |
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| T |
48121386 |
aaaggtaaaattgaaccagaccgttaattgt |
48121416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 48121405 - 48121454
Alignment:
| Q |
340 |
accgttaattgttgtcccgaaccagtatgaaggtttgttcacaggttctg |
389 |
Q |
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| T |
48121405 |
accgttaattgttgtcccgaaccagtatgaaggtttgttcactggttctg |
48121454 |
T |
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