View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13172_low_9 (Length: 389)

Name: NF13172_low_9
Description: NF13172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13172_low_9
NF13172_low_9
[»] chr3 (5 HSPs)
chr3 (10-375)||(53286810-53287175)
chr3 (118-365)||(54141771-54142010)
chr3 (12-121)||(52808073-52808182)
chr3 (12-118)||(54139833-54139943)
chr3 (133-365)||(52806508-52806742)
[»] chr6 (1 HSPs)
chr6 (10-375)||(11842564-11842927)
[»] chr1 (6 HSPs)
chr1 (12-121)||(23707251-23707358)
chr1 (144-304)||(23735577-23735734)
chr1 (144-304)||(23618606-23618764)
chr1 (144-304)||(23649952-23650109)
chr1 (144-280)||(23626738-23626871)
chr1 (144-280)||(23708464-23708597)
[»] chr4 (1 HSPs)
chr4 (12-100)||(48431774-48431862)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 53286810 - 53287175
Alignment:
Q  10 agatgaatcgcaatcaagtaaactagatattagctttccagttgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtca 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286810 agatgaatcgcagtcaagtaaactagatattagctttccagttgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtca 53286909  T
Q  110 aactgattacatcgtcaattaaattgtataagagttttattctttcatactagttgtgctgtcagaatttgaaggaacttcccagcaaccgagtgtctcc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286910 aactgattacatcgtcaattaaattgtataagagttttattctttcatactagttgtgctgtcagaatttgaaggaacttcccagcaaccgagtgtctcc 53287009  T
Q  210 ccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattctata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287010 ccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattctata 53287109  T
Q  310 ttgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaat 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287110 ttgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaat 53287175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 118 - 365
Target Start/End: Original strand, 54141771 - 54142010
Alignment:
Q  118 acatcgtcaattaaattgtataagagttttattctttcatactagttgtgctgtcagaatttgaaggaacttcccagcaaccgagtgtctccccaatcgt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||| ||    
T  54141771 acatcgtcaattaaattgtataagagttttattctttcatgctagttgtgctgtcggaatttgaaggaactagccagcaaccgagtgtctccccaatggt 54141870  T
Q  218 catcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattctatattgtcttt 317  Q
     ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||  ||    
T  54141871 tatcgaagtacaaatgcaatcaaataggtaactcaaatcatctctttttaatttcaaccaattgtatgtatgtttttattctag-------attgtaatt 54141963  T
Q  318 gtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttg 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54141964 gtttaagattaggcaac-ttaaagtgaaagtaagtttgctcaatgttg 54142010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 52808182 - 52808073
Alignment:
Q  12 atgaatcgcaatcaagtaaactagatattagctttccagttgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtcaaa 111  Q
    |||||||  ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52808182 atgaatcttaatcaagtaaactagttattagctttcaaattgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaa 52808083  T
Q  112 ctgattacat 121  Q
     |||||||||    
T  52808082 ttgattacat 52808073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 54139833 - 54139943
Alignment:
Q  12 atgaatcgcaatcaagtaaactagatattagctttccagttgatcctttagaatatctaccactt----tagcttctagagtatgtgtttcctcaaatgt 107  Q
    |||||||||| ||||||||||||| ||||||| |||| ||||||||||| |||||||| ||||||    |||||||||||||| ||||||||||||||||    
T  54139833 atgaatcgcagtcaagtaaactagttattagcgttccggttgatccttttgaatatctgccactttagctagcttctagagtacgtgtttcctcaaatgt 54139932  T
Q  108 caaactgatta 118  Q
    |||| ||||||    
T  54139933 caaattgatta 54139943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 365
Target Start/End: Complemental strand, 52806742 - 52806508
Alignment:
Q  133 ttgtataagagttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaa 231  Q
    ||||||| || |||| ||||||||||| |||||||||||  ||||||||||||||  |  |||| |  ||||||||||||| ||| |||||    ||||     
T  52806742 ttgtatatgaattttgttctttcataccagttgtgctgtatgaatttgaaggaacggtttcagcgattgagtgtctccccagtcgacatcatctcacaag 52806643  T
Q  232 tgcaaacaaacaggtaactcaaatcatctcttttt-aatttcaaccaattgtatgtacgtttttattctagattct-atattgtctttgtttaagattag 329  Q
    |||||| |    |||| |||||||||||||||||| ||| ||||||||||||||| | |||||||||||||| | | |||    ||||||||||||||||    
T  52806642 tgcaaata----ggtacctcaaatcatctcttttttaatatcaaccaattgtatgcatgtttttattctagagtgtcata----ctttgtttaagattag 52806551  T
Q  330 gcaact-------ttaaagtgaaagtaagtttgctcaatgttg 365  Q
    | ||||       ||||||||||||||||||||||||||||||    
T  52806550 gaaacttaaactcttaaagtgaaagtaagtttgctcaatgttg 52806508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 11842927 - 11842564
Alignment:
Q  10 agatgaatcgcaatcaagtaaactagatattagctttccagttgatcctttaga--atatctaccactttagcttctagagtatgtgtttcctcaaatgt 107  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11842927 agatgaattgcagtcaagtaaactagatattagctttccagttgatcctttagacaatatctaccactttagcttctagagtatgtgtttcctcaaatgt 11842828  T
Q  108 caaactgattacatcgtcaattaaattgtataagagttttattctttcatactagttgtgctgtcagaatttgaaggaacttcccagcaaccgagtgtct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||  |||||||||||||||||    
T  11842827 caaactgattacatcgtcaattaaattgtataagagttttattctttcc----agttgtgctgtcagaatttgaaggaactagccagcaaccgagtgtct 11842732  T
Q  208 ccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattcta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842731 ccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagattcta 11842632  T
Q  308 tattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaat 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842631 tattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaat 11842564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 23707251 - 23707358
Alignment:
Q  12 atgaatcgcaatcaagtaaactagatattagctttccagttgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtcaaa 111  Q
    ||||||| || ||||||||||||| ||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23707251 atgaatcacagtcaagtaaactagttattagctttccaattgaaa--ttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaa 23707348  T
Q  112 ctgattacat 121  Q
     || ||||||    
T  23707349 ttgcttacat 23707358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 23735734 - 23735577
Alignment:
Q  144 ttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaac 242  Q
    |||| |||||||||||||||||||||||  ||| ||| |||||   | |||| |||||||||||||||||||||| ||||||   ||||||    ||||     
T  23735734 ttttgttctttcatactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgttatcaaatctcaaatg----caaat 23735639  T
Q  243 aggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagatt 304  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||| | ||||||||||||||||    
T  23735638 aggtaactcgaatcatcactttttaatatcaaccaattgtatggatgtttttattctagatt 23735577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 23618764 - 23618606
Alignment:
Q  144 ttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaac 242  Q
    |||| |||||||||||||||||||||||  ||| ||| ||||||  | |||| |||||||||||||||||||| ||||||||   ||||||    ||||     
T  23618764 ttttgttctttcatactagttgtgctgttggaaattggaggaacgatgccaggaaccgagtgtctccccaatcttcatcaaatctcaaatg----caaat 23618669  T
Q  243 aggtaactcaaatcatctctttttaatttcaaccaattgtatgtacg-tttttattctagatt 304  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||| | | |||||||||||||||    
T  23618668 aggtaactcgaatcatcactttttaatatcaaccaattgtatggatgttttttattctagatt 23618606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 23650109 - 23649952
Alignment:
Q  144 ttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaac 242  Q
    |||| |||||||||||||||||||||||  ||| ||| |||||   | |||| |||||||||||||| ||||||||||||||   | |||||||| |       
T  23650109 ttttgttctttcatactagttgtgctgttggaaattggaggaaaggtgccaggaaccgagtgtctcctcaatcgtcatcaaatctcgaatgcaaata--- 23650013  T
Q  243 aggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgtttttattctagatt 304  Q
     |||||||| ||||||  ||||||||| ||||||||||||||| | ||||||||||||||||    
T  23650012 -ggtaactcgaatcattactttttaatatcaaccaattgtatggatgtttttattctagatt 23649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 23626738 - 23626871
Alignment:
Q  144 ttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaac 242  Q
    |||| |||||||||||||||||||||||  ||| ||| ||||||  | ||||||||||||||||||||||||| ||||||||   ||||||    ||||     
T  23626738 ttttgttctttcatactagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatg----caaat 23626833  T
Q  243 aggtaactcaaatcatctctttttaatttcaaccaatt 280  Q
    |||||| |||||| ||||| ||||||| ||||||||||    
T  23626834 aggtaaatcaaataatctcattttaatatcaaccaatt 23626871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 23708464 - 23708597
Alignment:
Q  144 ttttattctttcatactagttgtgctgtcagaatttgaaggaact-tcccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaac 242  Q
    |||| |||||||||||||||||||||||  ||| ||| ||||||  | ||||||||||||||||||||||||| ||||||||   ||||||    ||||     
T  23708464 ttttgttctttcatactagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatg----caaat 23708559  T
Q  243 aggtaactcaaatcatctctttttaatttcaaccaatt 280  Q
    |||||| |||||| ||||| ||||||| ||||||||||    
T  23708560 aggtaaatcaaataatctcattttaatatcaaccaatt 23708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 48431862 - 48431774
Alignment:
Q  12 atgaatcgcaatcaagtaaactagatattagctttccagttgatcctttagaatatctaccactttagcttctagagtatgtgtttcct 100  Q
    ||||||| ||| |||||||||||| |||||||||| ||  |||||||||||||| ||||||| ||||||||||||||||||| ||||||    
T  48431862 atgaatcacaaccaagtaaactagttattagcttttcaactgatcctttagaatttctaccagtttagcttctagagtatgtctttcct 48431774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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