View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_high_10 (Length: 583)

Name: NF13173_high_10
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_high_10
NF13173_high_10
[»] chr5 (8 HSPs)
chr5 (10-583)||(28873710-28874283)
chr5 (175-490)||(28858466-28858777)
chr5 (494-583)||(28872265-28872354)
chr5 (490-577)||(3031386-3031474)
chr5 (498-583)||(2357755-2357840)
chr5 (83-166)||(28843240-28843330)
chr5 (52-124)||(28858810-28858882)
chr5 (490-534)||(43095005-43095049)
[»] chr7 (2 HSPs)
chr7 (497-583)||(44968822-44968908)
chr7 (490-583)||(35324114-35324207)
[»] chr6 (3 HSPs)
chr6 (500-577)||(367415-367492)
chr6 (491-577)||(369264-369350)
chr6 (491-557)||(31888330-31888396)
[»] chr2 (7 HSPs)
chr2 (490-577)||(4284981-4285069)
chr2 (491-583)||(5989335-5989427)
chr2 (490-583)||(5983379-5983472)
chr2 (490-557)||(18163795-18163862)
chr2 (498-561)||(45485929-45485992)
chr2 (490-549)||(1645015-1645075)
chr2 (490-550)||(13273210-13273270)
[»] chr3 (3 HSPs)
chr3 (491-583)||(12221746-12221838)
chr3 (491-561)||(4315482-4315552)
chr3 (498-555)||(11171987-11172044)
[»] chr4 (1 HSPs)
chr4 (491-558)||(53008159-53008226)
[»] chr8 (1 HSPs)
chr8 (490-583)||(14685247-14685343)


Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Complemental strand, 28874283 - 28873710
Alignment:
Q  10 agaacctgtgtaacacttggagagatgatcgttgaaagaataaatttagcaacaaccgcgtttaagnnnnnnncacagtatcacattacatatattaatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  28874283 agaacctgtgtaacacttggagagatgatcgttgaaagaataaatttagcaacaaccgcgtttaagaaaaaaacacagtatcacattacatatattaatg 28874184  T
Q  110 ttgtgtatcaactgtctcttttataaatctaaacataatattgacacacatctataaatctaaacataatatttaagaaggcacatagagaacattagtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874183 ttgtgtatcaactgtctcttttataaatctaaacataatattgacacacatctataaatctaaacataatatttaagaaggcacatagagaacattagtt 28874084  T
Q  210 atggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggctcttctgcaacctgtgttctttttatttttctaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874083 atggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggctcttctgcaacctgtgttctttttatttttctaaa 28873984  T
Q  310 ccttctatttcctaggagaaagggctatgataatctgaattttgactgagaggtaagtagagtttgatcaaggactgttctagttaaagtcaaattcaag 409  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873983 ccttctatttcctaggagaaagggctatggtaatctgaattttgactgagaggtaagtagagtttgatcaaggactgttctagttaaagtcaaattcaag 28873884  T
Q  410 tacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacattgatgttctttagtgttattggattagtaattcat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873883 tacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacattgatgttctttagtgttattggattagtaattcat 28873784  T
Q  510 tttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28873783 tttagttagaattagtcttatctttgtttagcagtttgtttagaaacttgcatgtgaagtaactaactcaagtt 28873710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 175 - 490
Target Start/End: Complemental strand, 28858777 - 28858466
Alignment:
Q  175 ataatatttaagaaggcacatagagaacattagttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggc 274  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | |  |||||| ||| ||||||||||    
T  28858777 ataatatttaagaaggcacatagagagcattagttatggaacaaaatgctcaaatttggaatgagcattaatgtgtaaggcttggatttggcgccttggc 28858678  T
Q  275 tcttctgcaacctgtgttctttttatttttctaaaccttctatttcctaggagaaagggctatgataatctgaattttgactgagaggtaagtagagttt 374  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  28858677 tcttctgcagcctgtgctctttttatttttctaaaccttccgtttcctaggagaaagggctgtgataatctgaattttgactgagaggtaagtaaagttt 28858578  T
Q  375 gatcaaggactgttctagttaaagtcaaattcaagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacat 474  Q
    ||||||||| ||||| ||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||    |||||||||    
T  28858577 gatcaaggattgttccagtcaaagttgaattcaagtacttacggttgaatcaaccttatctgaagttcattaaccatctgatgtctt----gatttacat 28858482  T
Q  475 tgatgttctttagtgt 490  Q
    | ||||| ||||||||    
T  28858481 taatgttgtttagtgt 28858466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 494 - 583
Target Start/End: Complemental strand, 28872354 - 28872265
Alignment:
Q  494 tggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  28872354 tggattagtaattcattttatttagaattagtcttatctttgtttaacagtttgtttagaaacttgcatgtgaagtaactaactcaagtt 28872265  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 490 - 577
Target Start/End: Original strand, 3031386 - 3031474
Alignment:
Q  490 ttattggattagtaattcatt-ttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaact 577  Q
    ||||||| | ||||||||||| ||||||||||||||| ||||||||| |||  |||||||||||| |||| ||||||||||||||||||    
T  3031386 ttattggttaagtaattcattattagttagaattagttttatctttgcttaatagtttgtttagatacttgcatgtgaagtaactaact 3031474  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 498 - 583
Target Start/End: Complemental strand, 2357840 - 2357755
Alignment:
Q  498 ttagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    |||||| |||| || ||||||  ||||| ||||||||| |||| ||||| ||||||||||| ||  ||||||||||||||||||||    
T  2357840 ttagtagttcagttcagttagttttagttttatctttgattagtagtttatttagaaacttgcacttgaagtaactaactcaagtt 2357755  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 28843330 - 28843240
Alignment:
Q  83 cacagtatcacattacatatattaatgttgtgtatcaactgt-------ctcttttataaatctaaacataatattgacacacatctataa 166  Q
    ||||||||||| | ||| |||| |||| ||||||||||||||       ||||||||||||||||||||||||||| | ||||||||||||    
T  28843330 cacagtatcacttcacacatatcaatgctgtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatctataa 28843240  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 28858882 - 28858810
Alignment:
Q  52 aatttagcaacaaccgcgtttaagnnnnnnncacagtatcacattacatatattaatgttgtgtatcaactgt 124  Q
    ||||||||| ||||||||||||||       |||||||||||||||||||||| ||||  |||||||||||||    
T  28858882 aatttagcagcaaccgcgtttaagaataaatcacagtatcacattacatatatcaatgccgtgtatcaactgt 28858810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 534
Target Start/End: Original strand, 43095005 - 43095049
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatcttt 534  Q
    ||||||| ||||||||||| |||||||||||||||| || |||||    
T  43095005 ttattggtttagtaattcagtttagttagaattagttttgtcttt 43095049  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 497 - 583
Target Start/End: Complemental strand, 44968908 - 44968822
Alignment:
Q  497 attagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  44968908 attattaattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaacttgcatgtgaagtaactaactcaagtt 44968822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 490 - 583
Target Start/End: Complemental strand, 35324207 - 35324114
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    ||||||| |||||| |||| ||||||||   ||||  ||||||||| |||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  35324207 ttattggtttagtatttcagtttagttaattttagctttatctttgattagtagtttgtttagaaacttgcacttgaagtaactaactcaagtt 35324114  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 500 - 577
Target Start/End: Complemental strand, 367492 - 367415
Alignment:
Q  500 agtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaact 577  Q
    |||||||||||||||||||||||||| ||||||||| |||  ||||||||||||||||| ||||||||||||||||||    
T  367492 agtaattcattttagttagaattagttttatctttgcttaatagtttgtttagaaacttgcatgtgaagtaactaact 367415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 491 - 577
Target Start/End: Complemental strand, 369350 - 369264
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaact 577  Q
    |||||| | |||||||||||||||||||||||||| ||||||||| |||  ||| ||||||||||||| ||||||||||||||||||    
T  369350 tattggttaagtaattcattttagttagaattagttttatctttgcttaatagtctgtttagaaacttgcatgtgaagtaactaact 369264  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 557
Target Start/End: Original strand, 31888330 - 31888396
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaact 557  Q
    |||||| ||||||||||| |||||||||  ||||  ||||||||| |||| ||||||||| ||||||    
T  31888330 tattggtttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttggaaact 31888396  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 577
Target Start/End: Original strand, 4284981 - 4285069
Alignment:
Q  490 ttattggattagtaattcatt-ttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaact 577  Q
    ||||||| | ||||||||||| || |||||||||||| ||||||||| |||  |||||||||||| |||| ||||||||||||||||||    
T  4284981 ttattggttaagtaattcattattggttagaattagttttatctttgcttaatagtttgtttagatacttgcatgtgaagtaactaact 4285069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 583
Target Start/End: Original strand, 5989335 - 5989427
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    |||||| ||||||||||| |||||||||  ||||  ||||||||  |||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  5989335 tattggtttagtaattcagtttagttagttttagctttatctttaattagtagtttgtttagaaacttgcacttgaagtaactaactcaagtt 5989427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 490 - 583
Target Start/End: Original strand, 5983379 - 5983472
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    ||||||| ||||||||||| |||||||||  ||||  |||| |||| |||| ||||||||||||||||| ||  |||||||||||| |||||||    
T  5983379 ttattggtttagtaattcagtttagttagttttagctttatttttgattagtagtttgtttagaaacttgcacttgaagtaactaaatcaagtt 5983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 18163795 - 18163862
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaact 557  Q
    ||||||| ||||||||||| |||||||||  ||||  ||||||||| |||| ||||||||| ||||||    
T  18163795 ttattggtttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttggaaact 18163862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 45485992 - 45485929
Alignment:
Q  498 ttagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttaca 561  Q
    ||||||||||| |||||||||  ||||  ||||||||| |||| ||||||||| ||||||||||    
T  45485992 ttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttggaaacttaca 45485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 1645015 - 1645075
Alignment:
Q  490 ttattggattagtaattcattttagttagaattag-tcttatctttgtttagcagtttgtt 549  Q
    ||||||| | ||||||||||||||||||||||||| | ||||||||| |||  ||||||||    
T  1645015 ttattggttaagtaattcattttagttagaattagtttttatctttgcttaatagtttgtt 1645075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 550
Target Start/End: Original strand, 13273210 - 13273270
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgttt 550  Q
    ||||||| ||||||||||| |||||||||  ||||  ||||||||| |||| |||||||||    
T  13273210 ttattggtttagtaattcagtttagttagttttagctttatctttgattagtagtttgttt 13273270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 583
Target Start/End: Complemental strand, 12221838 - 12221746
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||| |||| |||||||  |  | ||| ||  ||||||||||||||||||||    
T  12221838 tattggtttagtaattcattttagttggaattagttttatctttggttagtagtttgtaaaatagcttgcacatgaagtaactaactcaagtt 12221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 561
Target Start/End: Original strand, 4315482 - 4315552
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttaca 561  Q
    |||||| ||||||||||| |||||||||  ||||  ||||||||| |||| ||||||||| ||||||||||    
T  4315482 tattggtttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttggaaacttaca 4315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 11171987 - 11172044
Alignment:
Q  498 ttagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaa 555  Q
    ||||||||||| |||||||||  ||||  ||||||||| |||| ||||||||||||||    
T  11171987 ttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttagaaa 11172044  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 53008159 - 53008226
Alignment:
Q  491 tattggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaactt 558  Q
    |||||| ||||||||||| |||||||||  ||||  ||||||||| |||| |||||||||||||||||    
T  53008159 tattggtttagtaattcagtttagttagttttagctttatctttgattagtagtttgtttagaaactt 53008226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 583
Target Start/End: Original strand, 14685247 - 14685343
Alignment:
Q  490 ttattggattagtaattcattttagttagaattagtcttatct---ttgtttagcagtttgtttagaaacttacatgtgaagtaactaactcaagtt 583  Q
    ||||||| ||||||||||| |||||||||  |||||  ||| |   ||| |||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  14685247 ttattggtttagtaattcagtttagttagttttagttctatataatttgattagtagtttgtttagaaacttgcacttgaagtaactaactcaagtt 14685343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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