View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13173_high_11 (Length: 561)
Name: NF13173_high_11
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 444 - 561
Target Start/End: Original strand, 19159620 - 19159737
Alignment:
| Q |
444 |
tgtttctgttcactgttccacaatttagaatcattttgcagctataattgaacttttttagaatacaatattaatttagagttattatgtaattaattat |
543 |
Q |
| |
|
||||| ||||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
19159620 |
tgtttttgttcactgttcctctaattagaaacattttgcagctataattgaacttttttagaatacaatattaatttagagttattatataattaactat |
19159719 |
T |
|
| Q |
544 |
ttttaagaacagttgttc |
561 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
19159720 |
tttcaagaaaagttgttc |
19159737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 22239229 - 22239302
Alignment:
| Q |
278 |
caagccgtctgtcctctcctcgatcaccctgttcctgcgctttccgacgtcgcggcaacacatcaaaccaatct |
351 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||| ||||||| ||||| ||| ||| ||||||| |
|
|
| T |
22239229 |
caagccgtctgtcgcatcctcgatcaacctgtccctgcgcttttcgacgtctcggcatcacgtcagcccaatct |
22239302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University