View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_13 (Length: 549)
Name: NF13173_high_13
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_13 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Original strand, 34776482 - 34777006
Alignment:
| Q |
19 |
cacacaccggatacaatattgacaatgacacagacaccagaattaaatttagtcaatgaaattgtttcaatttattaacatgtgtccatgttgagataat |
118 |
Q |
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| T |
34776482 |
cacacaccggacacaatattgacaatgacacagacaccagaattaaatttagtcaatgaaattgtttcaatttattaacatgtgtccgtgttgagataat |
34776581 |
T |
|
| Q |
119 |
gttagacattaaaatgtgtaggatacattaccttcaatctgaagtgtctgtgttacataacttttgctaataaggataaaatggtagtaactagtaacaa |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34776582 |
gttagacattaaaatgtgtaggatacattactttcaatccgaagtgtctctgctacataacttttgctaataaggataaaatggtagtaactagtaataa |
34776681 |
T |
|
| Q |
219 |
attaagatgcatattttggattaaccaaataagtaaattaaatgtcaattgtcttttatcacagtgggttctgcatgattggaatgatgaacaatcctta |
318 |
Q |
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| T |
34776682 |
attaa------tattttggattaaccaaataactaaattaaatgtcaattgtcttttatcatagtgggttctgcatgattggaatgatgaacaatcctta |
34776775 |
T |
|
| Q |
319 |
aagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccgcg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34776776 |
aagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccggg |
34776875 |
T |
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| Q |
419 |
gattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgc |
518 |
Q |
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| T |
34776876 |
gattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgc |
34776975 |
T |
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| Q |
519 |
aggttttagcagctacaaaattacccccatt |
549 |
Q |
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| T |
34776976 |
aggttttagcagctacaaaattacccccatt |
34777006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 281 - 549
Target Start/End: Original strand, 34784904 - 34785172
Alignment:
| Q |
281 |
agtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattat |
380 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
34784904 |
agtgggttttgcatgactggaatgatgaattatccttaaagatattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattat |
34785003 |
T |
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| Q |
381 |
cattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaa |
480 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
34785004 |
cattgacatatcaattgatgaaacaagtgatgatcgtagattaactgagttgcaattggaatatgatttggtgatgcttacaatgttccttggtaaagaa |
34785103 |
T |
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| Q |
481 |
agaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatt |
549 |
Q |
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| T |
34785104 |
agaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatt |
34785172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 277 - 542
Target Start/End: Complemental strand, 11467576 - 11467311
Alignment:
| Q |
277 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtga |
376 |
Q |
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|||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| | | |
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| T |
11467576 |
tcacagtgggttttgcatgattgggatgatgaactctccttaaagatattgaataacagcaaagaagctatttcaggaaaaggaaaaaaaggaaagataa |
11467477 |
T |
|
| Q |
377 |
ttatcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaa |
476 |
Q |
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| T |
11467476 |
taatcatagacatatcaattgatgaaacaagtgaagatcgtgagttaaccgagttacaattgcactttgacatggtaatgatgactctacataatggaaa |
11467377 |
T |
|
| Q |
477 |
agaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattac |
542 |
Q |
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| T |
11467376 |
agaaagagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattac |
11467311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 277 - 542
Target Start/End: Original strand, 11524297 - 11524562
Alignment:
| Q |
277 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtga |
376 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||||||||||||| ||||| || | ||||| | | |
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| T |
11524297 |
tcacagtgggttctgcatgattgggatgatgaactctccctaaggatattgaagaactgcaaagaagctatttcaggaaaagggaaaaaaggaaagataa |
11524396 |
T |
|
| Q |
377 |
ttatcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaa |
476 |
Q |
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| ||||| ||| ||||||||||||||||||||||||| | | |||||| |||||||||||| ||| ||| |||| ||| | || || | ||| || |
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| T |
11524397 |
taatcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattgcactttgacatggtaatgatgactctgcataatggaaa |
11524496 |
T |
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| Q |
477 |
agaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattac |
542 |
Q |
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| T |
11524497 |
agaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattac |
11524562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 410
Target Start/End: Original strand, 11508085 - 11508215
Alignment:
| Q |
280 |
cagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatta |
379 |
Q |
| |
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|||||| |||||||||||||||||||||| | || |||||||||||||||||| ||||| |||||||||| ||||| || ||||| ||||| | |
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| T |
11508085 |
cagtggattctgcatgattggaatgatgatctctctttaaagatattgaagaactgcaaaacagctatttcaggaaaagggaaaacgggaaaggtgataa |
11508184 |
T |
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| Q |
380 |
tcattgacatatcaattgatgaaacaagtga |
410 |
Q |
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| T |
11508185 |
tcattgacatatcaattgatgaaacaagtga |
11508215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 279 - 410
Target Start/End: Original strand, 11548426 - 11548557
Alignment:
| Q |
279 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
378 |
Q |
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||||||| || |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |
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| T |
11548426 |
acagtggattttgcatgattggaatgatgaattgtccttaaagatattggagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgata |
11548525 |
T |
|
| Q |
379 |
atcattgacatatcaattgatgaaacaagtga |
410 |
Q |
| |
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| T |
11548526 |
atcattgacatatcaattgacgaaacaagtga |
11548557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 410
Target Start/End: Complemental strand, 11444682 - 11444551
Alignment:
| Q |
279 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
378 |
Q |
| |
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||||||| || |||||||||||||||| ||| |||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |
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| T |
11444682 |
acagtggattttgcatgattggaatgacgaattgtccttaaagatattagagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgata |
11444583 |
T |
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| Q |
379 |
atcattgacatatcaattgatgaaacaagtga |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11444582 |
atcattgacatatcaattgatgaaacaagtga |
11444551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 542
Target Start/End: Original strand, 11487725 - 11487888
Alignment:
| Q |
379 |
atcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaag |
478 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||| | | |||||| |||||||||||| ||| ||| |||| ||| | || || | ||| |||| |
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| T |
11487725 |
atcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattgcactttgacatggtaatgatgactctgcataatggaaaag |
11487824 |
T |
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| Q |
479 |
aaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattac |
542 |
Q |
| |
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||||| |||| |||||||| | |||||||| ||||| || || || ||||||||||| ||||| |
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| T |
11487825 |
aaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattac |
11487888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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