View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_19 (Length: 459)
Name: NF13173_high_19
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Original strand, 281259 - 281694
Alignment:
| Q |
20 |
gctttcatatccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaata |
119 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
281259 |
gctttcatatccaatactgatgaggaagatgttcattgtaatgtggatactgatgaaagtgtttcagattcaattgtgcttcttggtagacgattcaata |
281358 |
T |
|
| Q |
120 |
aggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaacatgcagctcgacattagtaaaatcagtgggttccaacgcaaggaaataactaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
281359 |
aggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaatatgcagctcgacattagtaaaataagtgggttccaacgcaaggaaagaactaa |
281458 |
T |
|
| Q |
220 |
tgagaagaaaaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattag-aaaaa |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
281459 |
tgagaagaaaaatcaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattagaaaaaa |
281558 |
T |
|
| Q |
319 |
ggggttatttgtctcatggtcagataatgattcagaagaaagaacctgatgatgaaactgctaacaagtcactactcttactggtaaatgtgattcttat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |
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| T |
281559 |
ggggttatttgtctcatggtcagataatgattcagaagaaagaacctgatgatgaaagtgctaacaagtcactgctcttactggtaaatgtgattctgat |
281658 |
T |
|
| Q |
419 |
ggagattacagtaatgatgatgtttcctatgcttct |
454 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
281659 |
ggagattacagtaatgatgatgtttcctatggttct |
281694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 24514839 - 24514551
Alignment:
| Q |
20 |
gctttcatatccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaata |
119 |
Q |
| |
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|||||||||||||| | |||||||||||| || || ||| ||||||||||| ||| |||| ||| |||| |||||| |||||| || || |||||||||| |
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| T |
24514839 |
gctttcatatccaacactgatgaggaagaagtacaatgtgatgtggatactgatgcaagtttttcagatgcaattgcgcttctcggaaggcaattcaata |
24514740 |
T |
|
| Q |
120 |
aggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaacatgcagctcgacattagta--aaatcagtgggttccaacgcaaggaaataact |
217 |
Q |
| |
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||||| ||||||| ||| || |||||||| || |||||||||||||||||| | |||| |||| || || |||||| || || || | | |||| |
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| T |
24514739 |
aggttttgaaaaggatggtcaagaagtcaagactaaatgtcaagaacatgcagttgaacatcagtaagaacacaatgggtttcatcgtaaagggagaact |
24514640 |
T |
|
| Q |
218 |
aatgagaagaaaaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaa |
306 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||| ||||||||||| | ||| |||||| |
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| T |
24514639 |
gatgagaaagaaaaccaagggaaaggaattcaatgtcatgaatgtgaaggttttggtcacatcaaatcagaatgtcatgtgttcctcaa |
24514551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 20177959 - 20177790
Alignment:
| Q |
182 |
agtaaaatcagtgggttccaacgcaaggaaataactaatgagaagaaaaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatca |
281 |
Q |
| |
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||||||| |||||||||||||||||| |||| | |||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
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| T |
20177959 |
agtaaaaacagtgggttccaacgcaaagaaaagattaatgagaagcaaaaccaagggaaatgaattatgtgtcatggatgtgaaggttttggccacatca |
20177860 |
T |
|
| Q |
282 |
tatcagaatgtcgtatgtacctcaataattagaaaaaggggttatttgtctcatggtcagataatgattc |
351 |
Q |
| |
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||||||||||| || ||| ||||| || ||||||||||| | | |||||| ||||||||| ||||||| |
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| T |
20177859 |
aatcagaatgtcctacgtatctcaagaaacagaaaaaggggatgtctgtctcttggtcagatgatgattc |
20177790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 20181644 - 20181517
Alignment:
| Q |
41 |
gaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataaggttctgaaaagaatgtaca |
140 |
Q |
| |
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||||||||||| || | |||||||||||||| ||||||| ||| |||| ||||||| ||||||| | ||||| || |||||| ||||||||||| || |
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| T |
20181644 |
gaggaagatgtgcaatctaatgtggatactagtgaaagtttttcagatgtaattgtgattcttggatggcaatttaagaaggttttgaaaagaatggac- |
20181546 |
T |
|
| Q |
141 |
ggaagtcaaaacctaatgtcaagaacatg |
169 |
Q |
| |
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||||||| | ||||||||||||||||||| |
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| T |
20181545 |
ggaagtctagacctaatgtcaagaacatg |
20181517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 17402062 - 17401918
Alignment:
| Q |
19 |
agctttcatatccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaat |
118 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| ||| | ||||| | ||||||| ||| |||| ||||||||||||||||||| ||||||| |
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|
| T |
17402062 |
agctttcatatccaacactaatgaggaagatgttcaatgtgaattggattttgatgaaagaattttagatgcaattgtgcttcttggtag-gaattcaac |
17401964 |
T |
|
| Q |
119 |
aaggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaaga |
164 |
Q |
| |
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|||||| ||||||||||| |||||| |||| | ||||||||||| |
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| T |
17401963 |
aaggttttgaaaagaatggccaggaattcaaggcataatgtcaaga |
17401918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 18592596 - 18592520
Alignment:
| Q |
110 |
caattcaataaggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaacatgcagctcgacattagtaa |
186 |
Q |
| |
|
|||||||||||||| ||||| |||||| | |||||| ||| ||| ||||||||||||||| ||||||||||||| |
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|
| T |
18592596 |
caattcaataaggtgctgaagagaatggataggaagccaagaccaaatgtcaagaacatgtcattcgacattagtaa |
18592520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 6096258 - 6096404
Alignment:
| Q |
229 |
aaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattagaaaaaggggttattt |
328 |
Q |
| |
|
||||||||||||| |||||| ||| ||| |||||| |||||||| | ||||| ||||||||||| || || ||||| || ||||||| | ||| ||| |
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|
| T |
6096258 |
aaaccaagggaaacaaattcaatgtcatgaatgtgagggttttggtcgcatcaaatcagaatgtcctacgtttctcaagaaagagaaaaatgagttgttt |
6096357 |
T |
|
| Q |
329 |
gtctcatggtcagataatgattcagaagaaagaacctgatgatgaaac |
376 |
Q |
| |
|
||||| |||||| || |||||||||||| ||| |||||||||||||| |
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|
| T |
6096358 |
gtctcttggtcatatgatgattcagaag-gagagcctgatgatgaaac |
6096404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 19563525 - 19563437
Alignment:
| Q |
29 |
tccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa |
117 |
Q |
| |
|
||||| |||||||||||||||||||| ||| | |||| ||| |||||||| ||| |||| |||||||| |||||||||| ||||||| |
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|
| T |
19563525 |
tccaacattgatgaggaagatgttcaatgtgaaatggagactgatgaaagtattttagatgcaattgtgtgtcttggtagagaattcaa |
19563437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 6096109 - 6096254
Alignment:
| Q |
22 |
tttcatatccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataag |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||||| | | || ||||||||||||||| | || | || |||||||||||||||| | | |||||||||| |
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|
| T |
6096109 |
tttcatatccaacactgatgaggaagatgtataattagatatggatactaatgaaatttattcacatgcaattgtgcttcttggaatgcgattcaataag |
6096208 |
T |
|
| Q |
122 |
gttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaaca |
167 |
Q |
| |
|
|| |||| | ||| |||||||||||| ||| |||||||| |||| |
|
|
| T |
6096209 |
gtgttgaagatgatggacaggaagtcaagaccaaatgtcaaaaaca |
6096254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 9296813 - 9296735
Alignment:
| Q |
39 |
atgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa |
117 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||| |||||||| ||| |||| || |||||| |||||||||| ||||||| |
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|
| T |
9296813 |
atgaggaagatgttcaatgtgatatggagactgatgaaagtattttagatgcatttgtgcgtcttggtagagaattcaa |
9296735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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