View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_20 (Length: 437)
Name: NF13173_high_20
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 41917851 - 41917439
Alignment:
| Q |
18 |
tgttcaaccataaagtggtacccaccatcactccaactaaactaaaaattcctaaaaccaaaatcacccaccgacagtttttctataagcaaattccata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917851 |
tgttcaaccataaagtggtacccaccatcactccaaccaaactaaaaattcctaatacaaaaatcacccaccgacagtttttctataagcaaattccata |
41917752 |
T |
|
| Q |
118 |
ttaagaatcttaatttaagattaggtcaaaatctaaatttagaaaagtgctctgttggtgttgaaacttnnnnnnnnnnnnnnnnnnnttaccaaatttc |
217 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
41917751 |
ttaagaatcttaatttaagattatgtcaaaatctaaatttagaaaagtgctttgttggtgttgaaacttaaaagaaaaagaaagaaaattaccaaatttc |
41917652 |
T |
|
| Q |
218 |
caacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcagcatcaaatattg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917651 |
caacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcagcatcaaatattg |
41917552 |
T |
|
| Q |
318 |
caacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcgtactttatatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41917551 |
caacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcatactttatatt |
41917452 |
T |
|
| Q |
418 |
cactcctttgctt |
430 |
Q |
| |
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||||||||||||| |
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| T |
41917451 |
cactcctttgctt |
41917439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 206 - 435
Target Start/End: Original strand, 26832567 - 26832796
Alignment:
| Q |
206 |
ttaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcag |
305 |
Q |
| |
|
|||||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| |||||||||||||||| |
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| T |
26832567 |
ttaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcag |
26832666 |
T |
|
| Q |
306 |
catcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttc |
405 |
Q |
| |
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||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
26832667 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttc |
26832766 |
T |
|
| Q |
406 |
gtactttatattcactcctttgcttctcca |
435 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
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|
| T |
26832767 |
atactttatattcacacctttgcttctcca |
26832796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 280 - 427
Target Start/End: Original strand, 26791663 - 26791810
Alignment:
| Q |
280 |
aaaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttg |
379 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || |||||| |
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| T |
26791663 |
aaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttg |
26791762 |
T |
|
| Q |
380 |
tatccatttctattgtccctaacttcgtactttatattcactcctttg |
427 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||| ||||| |||||| |
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|
| T |
26791763 |
tacccatttctgttgtccctaacttcatactttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 26785924 - 26786070
Alignment:
| Q |
281 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
380 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
26785924 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
26786023 |
T |
|
| Q |
381 |
atccatttctattgtccctaacttcgtactttatattcactcctttg |
427 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||| ||||| |||||| |
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| T |
26786024 |
acccatttctgttgtccctaacttcatactttatgttcacacctttg |
26786070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 26822568 - 26822711
Alignment:
| Q |
284 |
tcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatc |
383 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || |||||||| | |
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| T |
26822568 |
tcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacc |
26822667 |
T |
|
| Q |
384 |
catttctattgtccctaacttcgtactttatattcactcctttg |
427 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||| |||||| |
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| T |
26822668 |
catttctgttgtccctaacttcatactttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 399
Target Start/End: Complemental strand, 41546352 - 41546246
Alignment:
| Q |
293 |
ggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctat |
392 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| | || |||||||||||||||||||||||||| | ||| || |||||||| |||||||||| |
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| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
393 |
tgtccct |
399 |
Q |
| |
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| ||||| |
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|
| T |
41546252 |
tttccct |
41546246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 20239135 - 20239222
Alignment:
| Q |
298 |
aaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatcca |
385 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| ||||||||| | || | ||||||||| || || ||||||||||||||| |
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|
| T |
20239135 |
aaaatcagcatcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgtatcca |
20239222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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