View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_21 (Length: 422)
Name: NF13173_high_21
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_21 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 42474291 - 42473883
Alignment:
| Q |
15 |
gatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagttttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474291 |
gatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagttttt |
42474192 |
T |
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| Q |
115 |
ggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggcta |
214 |
Q |
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| T |
42474191 |
ggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggcta |
42474092 |
T |
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| Q |
215 |
agacaataaaataatccgttcgaaatgataagcttatcgcacatgatgctacaggagagtaccgcgtcat-attaacagtggtccattcttttgccccag |
313 |
Q |
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| T |
42474091 |
agacaataaaataatccgttcgaaatgataagcttattgcacatgatgctacaggagagtaccgcgtaataattaacagtggtccattcttttgccccag |
42473992 |
T |
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| Q |
314 |
gataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcg |
413 |
Q |
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| T |
42473991 |
gataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcg |
42473892 |
T |
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| Q |
414 |
gtatgtcct |
422 |
Q |
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| T |
42473891 |
gtatgtcct |
42473883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 42479826 - 42479421
Alignment:
| Q |
15 |
gatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagttttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
42479826 |
gatctaacttgaaaattattgggtcctcaccacaacatatatgaactacaaatatatttcctttgtgctctatcataaatttccctttcgaccaattttt |
42479727 |
T |
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| Q |
115 |
ggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggcta |
214 |
Q |
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| T |
42479726 |
ggcagtagaactctctgctaggcatttgggcggaggtactttgaaaacagtccaagtacgttcaagtgggtcaaacacccctagccaacctctgtcgctc |
42479627 |
T |
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| Q |
215 |
agacaataaaataatccgttcgaaatgataagcttatcgcacatgatgctacaggagagtaccgcgtcat-attaacagtggtccattcttttgccccag |
313 |
Q |
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| T |
42479626 |
agacaataaaataacccattagaaaagacaagcttatcgcac---atgctacatgagagttccgcgtcataattaacagtggtccattctttttccccag |
42479530 |
T |
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| Q |
314 |
gataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcg |
413 |
Q |
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| T |
42479529 |
gataacacgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacatccagttgatgttggagcacatgagaaggcagcaatttg |
42479430 |
T |
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| Q |
414 |
gtatgtcct |
422 |
Q |
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|||||||| |
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| T |
42479429 |
atatgtcct |
42479421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 42467632 - 42467416
Alignment:
| Q |
12 |
tccgatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtt |
111 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | |||| |
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| T |
42467632 |
tccgatctaatttgaaaattattgggtcctcaccacaacatatatgaatgacaaatatatttcctttgtgatctatcataaagctctctttcgccgagtt |
42467533 |
T |
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| Q |
112 |
tttggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtgg |
211 |
Q |
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||||| ||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| | |||| |||||||||||||| ||| ||||| |||||| |
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| T |
42467532 |
tttggcagtagaactctctaataggcatttgggcggaggtacaacgagaacgctccaagtatattcaattgggtcaaacacccgtagacaaccagtgtgg |
42467433 |
T |
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| Q |
212 |
ctaagacaataaaataa |
228 |
Q |
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|| | |||||||||||| |
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| T |
42467432 |
cttaaacaataaaataa |
42467416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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