View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13173_high_24 (Length: 382)
Name: NF13173_high_24
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 11423101 - 11423479
Alignment:
| Q |
3 |
caccaacaccaaccaccgtttcatcaacaccgtacgaccgtgtaagagccgtgaaagaatttgacgaaacaaaatccggcgtaaaaggcttaatcgactc |
102 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||||||| || | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11423101 |
caccaccaccaaccaccgtctcatcaccaccgtacgatcgaatcaaagccgtgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactc |
11423200 |
T |
|
| Q |
103 |
cggaatcaaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacgatcagatttctcccaaccggaaatccccacaatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11423201 |
cggaatcaaaaccattccatctttcttcatccatccacctgaaatcctatctgacctcactccacgatcagatttcccccaaccggaaatccccacaatc |
11423300 |
T |
|
| Q |
203 |
gacctctccgccatccaccactcccgcgccgccgtggttgaacagcttcgttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcg |
302 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11423301 |
gacctctccgccgtccaccactcccgcgccgccgtggttgaacagcttcgttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcg |
11423400 |
T |
|
| Q |
303 |
cgccggaattgatgcgaagtgtgatcggtgctatgaagaagtttcatgaacagccggctgacgagaggaagaaggtgta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11423401 |
cgccggaattgatgcgaagtgtgatcggtgctatgaagaagtttcatgaacagcctgctgacgagaggaagaaggtgta |
11423479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 11433732 - 11434104
Alignment:
| Q |
9 |
caccaaccaccgtttcatcaacaccgtacgaccgtgtaagagccgtgaaagaatttgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaat |
108 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11433732 |
caccaaccaccgtctcatcaccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcataatcgactccggaat |
11433831 |
T |
|
| Q |
109 |
caaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacgatcagatttctcccaaccggaaatccccacaatcgacctc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
11433832 |
caaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacgatcagatttcccccaaccgaaaatccccacaatcgacctc |
11433931 |
T |
|
| Q |
209 |
tccgccatccaccactcccgcgccgccgtggttgaacagcttcgttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcgcgccgg |
308 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11433932 |
tccgccgtccaccactcccgcgccgctgtggttgaacaacttcgttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcgcgccgg |
11434031 |
T |
|
| Q |
309 |
aattgatgcgaagtgtgatcggtgctatgaagaagtttcatgaacagccggctgacgagaggaagaaggtgta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
11434032 |
aattgatgcgaagtgtgatcggtgctatgaagaagtttcatgaacagcccgcggaggagaggaagaaggtgta |
11434104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 53 - 381
Target Start/End: Original strand, 11427898 - 11428225
Alignment:
| Q |
53 |
gtgaaagaatttgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaaccctat |
152 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||| ||||| |||| |
|
|
| T |
11427898 |
gtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattcacccacccgaaactctat |
11427997 |
T |
|
| Q |
153 |
ctgacctcactccacgatcagatttctcccaaccggaaatccccacaatcgacctctccgccatccaccactcccgcgccgccgtggttgaacagcttcg |
252 |
Q |
| |
|
| || ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| | || ||||| | |||||||||||| |||||||| |
|
|
| T |
11427998 |
ccgatctcactccacgatcagatttcccccaaccagaaattcccacaatcgacctctccgccat-aaacattcccgtgtcgccgtggttgatcagcttcg |
11428096 |
T |
|
| Q |
253 |
ttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcgcgccggaattgatgcgaagtgtgatcggtgctatgaagaagtttcatgaa |
352 |
Q |
| |
|
|||| | || ||||| || ||||||||||| |||||||||||||| || ||||| || |||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
11428097 |
ttccactgcaagtacggtgggattctttcaggtgatcaaccatggtgtagcgccagatttgatgcgaaacgttattggtgctatgaagaagtttcatgaa |
11428196 |
T |
|
| Q |
353 |
cagccggctgacgagaggaagaaggtgta |
381 |
Q |
| |
|
||||| || || ||||||||||||||||| |
|
|
| T |
11428197 |
cagcctgcggaggagaggaagaaggtgta |
11428225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 38 - 357
Target Start/End: Complemental strand, 11390418 - 11390099
Alignment:
| Q |
38 |
gaccgtgtaagagccgtgaaagaatttgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatc |
137 |
Q |
| |
|
|||||||| | ||| ||||||||||| || ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11390418 |
gaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatc |
11390319 |
T |
|
| Q |
138 |
cacctgaaaccctatctgacctcactccacgatcagatttctcccaaccggaaatccccacaatcgacctctccgccatccaccactcccgcgccgccgt |
237 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||| |||| || |
|
|
| T |
11390318 |
cacccgaaactctatccgacctcactccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgccgtccaccattcccgctccgctgt |
11390219 |
T |
|
| Q |
238 |
ggttgaacagcttcgttccgccgcgagtacagttggattctttcaagtgatcaaccatggagtcgcgccggaattgatgcgaagtgtgatcggtgctatg |
337 |
Q |
| |
|
|| |||||| ||||||| || || ||||| ||||||||||| |||||||||||| || || || ||||| ||| | | |||||| || |||||||| |
|
|
| T |
11390218 |
tgtggaacagattcgttcagcagcaagtacgtttggattctttagagtgatcaaccacggtgtggcaccggatttgctacaaagtgttattggtgctata |
11390119 |
T |
|
| Q |
338 |
aagaagtttcatgaacagcc |
357 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
11390118 |
aaggcgttccatgaacagcc |
11390099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 350
Target Start/End: Complemental strand, 9308696 - 9308500
Alignment:
| Q |
158 |
ctcactccacgatcagatttctcccaaccggaaatccccacaatcgacctctccgccatccaccactcccgcgccgccgtggttgaacagcttcgttccg |
257 |
Q |
| |
|
||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| || | | || ||||||||||||| |
|
|
| T |
9308696 |
ctcactccaagatcagatttc-cctaactggaaatccccacaatcgacctctccgccatccaccactcccgcgcctccatcatagatcagcttcgttccg |
9308598 |
T |
|
| Q |
258 |
ccgcgagtacagtt-----ggattctttcaagtgatcaaccatggagtcgcgccggaattgatgcgaagtgtgatcggtgctatgaagaagtttcatg |
350 |
Q |
| |
|
| || ||| | ||| ||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
9308597 |
ctgcaagttcggttggatcggattctttaaagtgatcaaccatggagttgcaccgaaattgatgtgaagtgtgattgatgctatgaagaagtttcatg |
9308500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University