View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13173_high_42 (Length: 238)
Name: NF13173_high_42
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 30285548 - 30285757
Alignment:
| Q |
4 |
aacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatctta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30285548 |
aacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggaacccttggttacttggctaaccgagatgacaacaaggatctta |
30285647 |
T |
|
| Q |
104 |
gagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatatatatggcacttgtattttttcaatgtatcactcttag--ttttggt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30285648 |
gagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatatatatggcacttgtattttttcaatgtatcactcttagttttttggt |
30285747 |
T |
|
| Q |
202 |
atatatatca |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
30285748 |
atatatatca |
30285757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 30314068 - 30314223
Alignment:
| Q |
2 |
caaacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||| |||| || |
|
|
| T |
30314068 |
caaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgctggcagcattgcttatttggctaaccgagatgacaaccaggacct |
30314167 |
T |
|
| Q |
102 |
tagagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatat |
157 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30314168 |
tagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
30314223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 30303199 - 30303354
Alignment:
| Q |
2 |
caaacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||||| |||| || |
|
|
| T |
30303199 |
caaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaaccgagatgacaaccaggacct |
30303298 |
T |
|
| Q |
102 |
tagagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatat |
157 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30303299 |
tagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
30303354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 30290518 - 30290662
Alignment:
| Q |
10 |
agaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatcttagagtct |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
30290518 |
agaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaaccgagctgacaacgaggaccttagagtat |
30290617 |
T |
|
| Q |
110 |
tagatcttgccatccccgttaacaggcccggtcaatttcaggtaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30290618 |
tagatcttgccatccccgttaacaggcctggtcaatttcaggtaa |
30290662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 30298018 - 30298170
Alignment:
| Q |
5 |
acaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatcttag |
104 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| |||||||||||||| |||| | ||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
30298018 |
acaacagaaactccttcaaccttgaacgcggtgatactatcaaactccctgccggcagcattgcttatttggctaaccgagatgacaatgaggatcttag |
30298117 |
T |
|
| Q |
105 |
agtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatat |
157 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30298118 |
agtattagatcttgccatccccgttaacagacccggtaaatttcaggtaatat |
30298170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 46809055 - 46809212
Alignment:
| Q |
4 |
aacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggcacccttggttacttggctaaccgagatgacaacgaggatctta |
103 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||| || ||||||||||| ||| | || ||| | | ||||| ||| | | |||||||||| |
|
|
| T |
46809055 |
aacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgaggatctta |
46809154 |
T |
|
| Q |
104 |
gagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatatatat |
161 |
Q |
| |
|
| || ||||||| | ||| || ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
46809155 |
gggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatatatat |
46809212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University