View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_high_44 (Length: 219)

Name: NF13173_high_44
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_high_44
NF13173_high_44
[»] chr8 (23 HSPs)
chr8 (15-212)||(39449339-39449546)
chr8 (43-219)||(12022178-12022359)
chr8 (18-215)||(20472702-20472904)
chr8 (54-219)||(8815187-8815357)
chr8 (43-219)||(43732707-43732896)
chr8 (65-218)||(16024182-16024341)
chr8 (43-212)||(30365165-30365339)
chr8 (39-200)||(9933287-9933454)
chr8 (46-219)||(34196336-34196514)
chr8 (84-219)||(43826360-43826500)
chr8 (86-200)||(9434377-9434497)
chr8 (80-215)||(6453214-6453356)
chr8 (65-219)||(8671849-8672010)
chr8 (78-196)||(40633059-40633182)
chr8 (78-140)||(29937614-29937676)
chr8 (157-219)||(7394615-7394677)
chr8 (164-219)||(12022171-12022226)
chr8 (178-219)||(30581988-30582029)
chr8 (164-219)||(43732848-43732903)
chr8 (78-155)||(24243118-24243194)
chr8 (94-155)||(38198135-38198196)
chr8 (178-218)||(1027023-1027063)
chr8 (111-155)||(27487087-27487131)
[»] chr4 (35 HSPs)
chr4 (1-141)||(44145842-44145982)
chr4 (18-208)||(43961449-43961644)
chr4 (21-218)||(22186748-22186950)
chr4 (16-217)||(55080609-55080815)
chr4 (15-219)||(17182490-17182701)
chr4 (63-212)||(4437480-4437633)
chr4 (43-219)||(7977530-7977713)
chr4 (63-212)||(29993826-29993980)
chr4 (18-219)||(56135777-56135965)
chr4 (43-200)||(37761512-37761673)
chr4 (43-216)||(47846090-47846269)
chr4 (43-217)||(54576362-54576543)
chr4 (64-188)||(54001162-54001289)
chr4 (63-202)||(5824946-5825085)
chr4 (54-199)||(34995099-34995247)
chr4 (77-190)||(9030272-9030391)
chr4 (47-157)||(21694929-21695038)
chr4 (15-149)||(11089619-11089756)
chr4 (79-157)||(14539367-14539445)
chr4 (64-196)||(51329847-51329983)
chr4 (176-219)||(44145801-44145844)
chr4 (83-213)||(55510204-55510338)
chr4 (81-131)||(51075218-51075268)
chr4 (118-212)||(41227518-41227614)
chr4 (136-208)||(51074380-51074459)
chr4 (158-219)||(49735496-49735557)
chr4 (164-219)||(21694918-21694973)
chr4 (164-219)||(54576355-54576410)
chr4 (34-112)||(35543333-35543411)
chr4 (154-208)||(35543448-35543502)
chr4 (157-198)||(47846417-47846458)
chr4 (24-100)||(11842325-11842401)
chr4 (65-157)||(17938164-17938256)
chr4 (163-207)||(32192847-32192891)
chr4 (34-157)||(47433734-47433857)
[»] scaffold0095 (1 HSPs)
scaffold0095 (15-212)||(8182-8390)
[»] chr7 (30 HSPs)
chr7 (43-219)||(33519076-33519257)
chr7 (78-219)||(37925869-37926015)
chr7 (43-219)||(36267588-36267769)
chr7 (34-217)||(39646499-39646687)
chr7 (15-219)||(48013531-48013740)
chr7 (63-217)||(28074158-28074322)
chr7 (43-212)||(48881593-48881768)
chr7 (48-196)||(35422015-35422168)
chr7 (43-219)||(37620802-37620983)
chr7 (38-219)||(21857375-21857560)
chr7 (43-196)||(31364080-31364233)
chr7 (100-201)||(12670928-12671034)
chr7 (18-156)||(23116269-23116408)
chr7 (65-218)||(48015239-48015394)
chr7 (82-191)||(3215934-3216048)
chr7 (80-198)||(16833733-16833867)
chr7 (72-216)||(8122175-8122328)
chr7 (63-201)||(3143526-3143673)
chr7 (133-203)||(12682854-12682929)
chr7 (47-143)||(30592292-30592388)
chr7 (54-157)||(2087785-2087892)
chr7 (16-157)||(17852966-17853106)
chr7 (164-219)||(28074131-28074186)
chr7 (116-218)||(41497065-41497172)
chr7 (154-196)||(18795746-18795788)
chr7 (165-219)||(48881586-48881640)
chr7 (178-219)||(36267581-36267622)
chr7 (178-219)||(39856040-39856081)
chr7 (164-212)||(39646630-39646678)
chr7 (167-211)||(48147404-48147448)
[»] chr5 (21 HSPs)
chr5 (43-219)||(10204604-10204785)
chr5 (43-219)||(15986659-15986840)
chr5 (43-216)||(33744228-33744406)
chr5 (18-219)||(8551427-8551634)
chr5 (43-219)||(34980838-34981019)
chr5 (18-216)||(40305670-40305878)
chr5 (43-219)||(10043280-10043461)
chr5 (93-212)||(5688448-5688572)
chr5 (64-215)||(21580979-21581135)
chr5 (54-157)||(6382422-6382525)
chr5 (63-205)||(6597845-6597984)
chr5 (54-155)||(10043055-10043156)
chr5 (79-157)||(12036007-12036084)
chr5 (165-201)||(6382357-6382393)
chr5 (176-215)||(10043425-10043464)
chr5 (165-216)||(15858902-15858953)
chr5 (158-219)||(1657968-1658029)
chr5 (174-219)||(13634882-13634927)
chr5 (158-219)||(14245116-14245177)
chr5 (178-218)||(7544165-7544205)
chr5 (83-143)||(11437048-11437108)
[»] chr3 (26 HSPs)
chr3 (19-208)||(40858604-40858798)
chr3 (43-212)||(34641027-34641199)
chr3 (18-212)||(48683647-48683848)
chr3 (18-215)||(41414110-41414313)
chr3 (45-201)||(16884010-16884169)
chr3 (63-211)||(10943669-10943822)
chr3 (43-217)||(26135827-26136006)
chr3 (63-219)||(17474261-17474422)
chr3 (66-217)||(21090129-21090285)
chr3 (34-157)||(42772127-42772250)
chr3 (44-206)||(8432297-8432462)
chr3 (47-219)||(18086019-18086202)
chr3 (85-212)||(46978462-46978594)
chr3 (85-219)||(44412389-44412528)
chr3 (65-212)||(42699669-42699821)
chr3 (63-209)||(24253760-24253911)
chr3 (93-207)||(27197734-27197853)
chr3 (164-219)||(44412522-44412577)
chr3 (79-182)||(36727242-36727349)
chr3 (179-219)||(42772072-42772112)
chr3 (11-127)||(54985696-54985812)
chr3 (164-219)||(34641151-34641206)
chr3 (78-139)||(55428492-55428553)
chr3 (14-102)||(37102155-37102243)
chr3 (178-219)||(28582684-28582725)
chr3 (18-102)||(30200098-30200182)
[»] chr1 (25 HSPs)
chr1 (43-219)||(1085524-1085706)
chr1 (20-219)||(33643296-33643499)
chr1 (15-219)||(47071079-47071288)
chr1 (44-198)||(25268313-25268472)
chr1 (63-210)||(2506576-2506728)
chr1 (85-217)||(51303461-51303600)
chr1 (43-219)||(40709327-40709507)
chr1 (63-219)||(35927842-35928001)
chr1 (17-204)||(1344592-1344783)
chr1 (43-140)||(35512909-35513006)
chr1 (78-212)||(40287325-40287467)
chr1 (39-218)||(525133-525315)
chr1 (154-219)||(23536839-23536904)
chr1 (78-157)||(13386989-13387068)
chr1 (164-219)||(51303412-51303467)
chr1 (93-201)||(52707691-52707803)
chr1 (78-213)||(20607252-20607390)
chr1 (95-157)||(17622632-17622694)
chr1 (100-196)||(50079476-50079577)
chr1 (180-219)||(35512974-35513013)
chr1 (178-219)||(2859107-2859148)
chr1 (168-208)||(17622575-17622615)
chr1 (157-207)||(13387081-13387131)
chr1 (158-219)||(38509922-38509983)
chr1 (97-157)||(44210994-44211054)
[»] chr2 (30 HSPs)
chr2 (64-219)||(31061387-31061547)
chr2 (78-213)||(15085770-15085911)
chr2 (63-219)||(45257335-45257496)
chr2 (64-218)||(1052811-1052971)
chr2 (81-213)||(2381060-2381197)
chr2 (66-198)||(45098218-45098355)
chr2 (65-198)||(35325316-35325456)
chr2 (54-219)||(42296349-42296519)
chr2 (85-219)||(31928121-31928265)
chr2 (85-219)||(33265635-33265773)
chr2 (82-215)||(3094427-3094565)
chr2 (78-217)||(34187605-34187751)
chr2 (125-215)||(1270394-1270490)
chr2 (39-151)||(36052118-36052230)
chr2 (133-219)||(17333936-17334028)
chr2 (78-155)||(8554369-8554446)
chr2 (124-196)||(22356016-22356093)
chr2 (51-156)||(9313079-9313188)
chr2 (81-212)||(21502067-21502204)
chr2 (44-146)||(42813726-42813828)
chr2 (153-212)||(14196819-14196878)
chr2 (134-207)||(23739882-23739960)
chr2 (164-210)||(33265767-33265813)
chr2 (43-157)||(31795804-31795918)
chr2 (178-219)||(887285-887326)
chr2 (178-219)||(22356179-22356220)
chr2 (158-219)||(23748250-23748311)
chr2 (45-101)||(14187111-14187167)
chr2 (116-219)||(16713520-16713628)
chr2 (82-114)||(22356141-22356173)
[»] chr6 (19 HSPs)
chr6 (78-219)||(15353392-15353537)
chr6 (78-219)||(15323253-15323399)
chr6 (43-211)||(10293286-10293457)
chr6 (64-219)||(9051590-9051748)
chr6 (82-207)||(26318345-26318475)
chr6 (133-219)||(23091023-23091114)
chr6 (45-197)||(31798968-31799128)
chr6 (78-213)||(4097305-4097451)
chr6 (54-157)||(3841180-3841284)
chr6 (78-148)||(15373669-15373739)
chr6 (63-157)||(25468454-25468548)
chr6 (43-148)||(34176606-34176711)
chr6 (163-202)||(15373737-15373776)
chr6 (163-201)||(34177060-34177098)
chr6 (116-156)||(28477076-28477116)
chr6 (116-156)||(29692974-29693014)
chr6 (153-196)||(5287471-5287514)
chr6 (116-219)||(4097620-4097729)
chr6 (158-212)||(31849265-31849319)
[»] scaffold0026 (1 HSPs)
scaffold0026 (78-217)||(1467-1612)
[»] scaffold0119 (2 HSPs)
scaffold0119 (63-215)||(37415-37572)
scaffold0119 (125-215)||(30747-30843)
[»] scaffold0071 (1 HSPs)
scaffold0071 (13-201)||(52932-53122)
[»] scaffold0007 (2 HSPs)
scaffold0007 (43-157)||(242311-242425)
scaffold0007 (164-219)||(242377-242432)
[»] scaffold0012 (1 HSPs)
scaffold0012 (63-212)||(184636-184796)
[»] scaffold1414 (1 HSPs)
scaffold1414 (81-192)||(355-473)
[»] scaffold0240 (1 HSPs)
scaffold0240 (63-152)||(17640-17729)
[»] scaffold0067 (1 HSPs)
scaffold0067 (154-215)||(39341-39402)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-143)||(81498-81546)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 39449546 - 39449339
Alignment:
Q  15 ttaagggtgtgtttgggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaat 109  Q
    |||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  39449546 ttaagggtgtgtttgggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaat 39449447  T
Q  110 taacagcatgatcaatgatcatgtaatacttcaaaaacacttaat-----ttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccc 204  Q
    ||||| |||||| ||||||||| |||||||||||||||| |||||     |||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  39449446 taacaacatgattaatgatcatataatacttcaaaaacagttaatttatcttaaaaagacatttcacattgttcgtaatttaaaaaataaaagtgagctc 39449347  T
Q  205 tcccctcc 212  Q
    ||| ||||    
T  39449346 tcctctcc 39449339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 12022178 - 12022359
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||||| || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||    
T  12022178 ggaggggagggcttacttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttca 12022277  T
Q  143 aaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||     |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  12022278 aaaacacttaatttattttaaaaaaacattttacattgtccgtaatttaaaaaataaaagtgagccctcccctcctttcccc 12022359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 20472702 - 20472904
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 117  Q
    |||||||||||||  |||||| ||| ||||| ||||||||| || ||||||||| ||| |||||||||||||| | ||||| |||||||||||||||  |    
T  20472702 agggtgtgtttggatagagggattaagagggaagggcttacttttcttttttaaattacagacattataaaataaattttagaaaattgaattaacaata 20472801  T
Q  118 tgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    ||||  |||||||| ||||||||||||||||||| |||||     |||| |||  |||||||||||||||||||||||||||||||||| ||| || |||    
T  20472802 tgatatatgatcatataatacttcaaaaacacttgatttatttttaaaaaacaacttacattgttcgtaatttaaaaaataaaagtgagtccttccttcc 20472901  T
Q  213 ctt 215  Q
    |||    
T  20472902 ctt 20472904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 8815187 - 8815357
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacac-tta 152  Q
    ||||| || ||||||||| |||  ||||||||||||||||||||| |||||||||| |||| |||||| |||||| || ||||||||||||||||| |||    
T  8815187 cttacttttcttttttaaattacggacattataaaatgatttttagaaaattgaatcaacaacatgataaatgattatataatacttcaaaaacacttta 8815286  T
Q  153 attta----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  8815287 atttatttgaaaaaacattttacagtgttcgtaatttaaaaattaaaagtgaaccctcccctccctccccc 8815357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 43732896 - 43732707
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  |||||||||||||||  ||||| ||||||||| ||||||||||    
T  43732896 ggaggggagggtttacttttcttttttaaattacggacattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttca 43732797  T
Q  143 aaaacacttaattt-------------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||             ||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  43732796 aaaacacttaatttattttttttaaaaaaaaaaacattttacattgttagtaatttaaaaaataaaagtgagtcctcctctcccttcccc 43732707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 16024341 - 16024182
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta------a 158  Q
    ||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||      |    
T  16024341 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaatttatttaaaa 16024242  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    |||  ||||||| |||||||||||||||||||  |||| ||||| |||||||||||||||    
T  16024241 aaaatcattttatattgttcgtaatttaaaaacaaaaactgagctctcccctcccttccc 16024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 30365339 - 30365165
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||| | || ||||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||||| |||||| || ||| ||||||    
T  30365339 ggaggggagggcttccttttcttttttaaattacagacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttca 30365240  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||||||||||||||     |||| | ||||||  |||||||||||||||||| ||||||||| | |||||||||    
T  30365239 aaaacacttaatttattctaaaaaaatattttatgttgttcgtaatttaaaaattaaaagtgaactctcccctcc 30365165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 9933454 - 9933287
Alignment:
Q  39 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 138  Q
    ||||||||||||||| |||| || |||||||||  |   ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||     
T  9933454 tttaggaggggagggtttacttttcttttttaaaatttggacattataaaatgattttaaaaaaattgaattaacaacatgataaatgatcatataatat 9933355  T
Q  139 ttcaaaaacacttaattt------aaaaagacattttacattgttcgtaatttaaaaaataaaagtga 200  Q
    |||||||| |||||||||      ||||| | ||||||||||||||||||||||||| ||||||||||    
T  9933354 ttcaaaaatacttaatttattttgaaaaaaatattttacattgttcgtaatttaaaatataaaagtga 9933287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 34196514 - 34196336
Alignment:
Q  46 ggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaa 145  Q
    ||||||||||||| || |||||| |||| | |||||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||||||||||||    
T  34196514 ggggagggcttacttttctttttaaatt-acagacattataaaatgatttttagaaaattgaattaacaacaagataaacgatcatataatacttcaaaa 34196416  T
Q  146 acactta---attt----aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||   ||||    ||||| ||| || ||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  34196415 acacttatttatttaaaaaaaaaaacacttcacattgttcgtaatttaaaaaattaaagtga-cccccccctcccttcccc 34196336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 43826500 - 43826360
Alignment:
Q  84 ataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttc 178  Q
    ||||||| ||||||| ||||||||||||||| |||||| |||||||||  ||||||||||||||||||||     ||| |||| ||||||||||||||||    
T  43826500 ataaaataatttttagaaaattgaattaacaacatgataaatgatcataaaatacttcaaaaacacttaacttattttgaaaaaacattttacattgttc 43826401  T
Q  179 gtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||| ||||||||| ||| | ||||||||| ||||||    
T  43826400 gtaatttacaaaataaaaatgaactctcccctccattcccc 43826360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 9434377 - 9434497
Alignment:
Q  86 aaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt------aaaaagacattttacattgttcg 179  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| || ||||||||||||| ||||||||||      ||||| ||||||||||||||||     
T  9434377 aaaataatttttaaaaaattgaattaacaacatgataaatgataatataatacttcaaaaccacttaatttattaaaaaaaaaacattttacattgttcc 9434476  T
Q  180 taatttaaaaaataaaagtga 200  Q
    |||||||||||||||||||||    
T  9434477 taatttaaaaaataaaagtga 9434497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 6453356 - 6453214
Alignment:
Q  80 cattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa------tttaaaaagacattttacat 173  Q
    ||||||||||||||||||| ||||||||||||| | |||||| | | ||||| |||||||||||||||||||||      || ||||| | |||||||||    
T  6453356 cattataaaatgatttttagaaaattgaattaataacatgataagtaatcatataatacttcaaaaacacttaatatattttaaaaaaaatattttacat 6453257  T
Q  174 tgttcgtaattt-aaaaaataaaagtgagccctcccctccctt 215  Q
    | |||||||||| |||||||||||||||| | |||||||||||    
T  6453256 tattcgtaatttaaaaaaataaaagtgagtcttcccctccctt 6453214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 8671849 - 8672010
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatg--atcaatgatcatgtaatacttcaaaaacacttaa-----ttta 157  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||||||  |||  |  ||||||||| |||||||||||||| ||||||     ||||    
T  8671849 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaatatgaaaaaaatgatcatataatacttcaaaaatacttaatttatttta 8671948  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||| |||||||||||| || |||||||||||||||||| | || | |||||| ||||||||    
T  8671949 aaaatacattttacattatttgtaatttaaaaaataaaattaagtcatcccctaccttcccc 8672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 40633059 - 40633182
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttaca 172  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||| ||||||  | ||||| |||||||||||||||||||     |||  |||||||||     
T  40633059 gacattataaaataatttttagaaaattgaattaacaacatgataaatgattgtataatatttcaaaaacacttaatttattttaaaacaacattttacg 40633158  T
Q  173 ttgttcgtaatttaaaaaataaaa 196  Q
    |||||||||||| ||||| |||||    
T  40633159 ttgttcgtaattgaaaaattaaaa 40633182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 29937676 - 29937614
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatactt 140  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||    
T  29937676 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 29937614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 7394615 - 7394677
Alignment:
Q  157 aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||| || |||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  7394615 aaaaaaacgttttgcattgttcgtaatttaaaaaataaaagtgaaccatcccctcccttcccc 7394677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 12022226 - 12022171
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | |||||||||||||||||| |||||| ||||||||||||||||||||    
T  12022226 cattttataatgttcgtaatttaaaaaagaaaagtaagccctcccctcccttcccc 12022171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 30581988 - 30582029
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  30581988 cgtaatttaaaaaagaaaagtaagccctcccctcccttcccc 30582029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 43732848 - 43732903
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||||||||||| |||||| | ||||||||||||||||||    
T  43732848 cattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccc 43732903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 24243118 - 24243194
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaatt 155  Q
    |||| |||||||||  ||||||||| ||||| ||| | |||||| ||||||||| |||||||||||  ||||||||||    
T  24243118 gacactataaaatgtcttttaaaaa-ttgaaataataacatgataaatgatcatataatacttcaatcacacttaatt 24243194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 38198135 - 38198196
Alignment:
Q  94 ttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaatt 155  Q
    |||| |||||||||| ||||| ||||||  |||||||| |||||||||||  ||||||||||    
T  38198135 tttttaaaaattgaaataacaacatgatatatgatcatataatacttcaatcacacttaatt 38198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 1027023 - 1027063
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    |||||||||||||| |||||||| |||| ||||||||||||    
T  1027023 cgtaatttaaaaaagaaaagtgaacccttccctcccttccc 1027063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 27487131 - 27487087
Alignment:
Q  111 aacagcatgatcaatgatcatgtaatacttcaaaaacacttaatt 155  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||    
T  27487131 aacaacatgataaatgatcatataatacttcaataacacttaatt 27487087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44145982 - 44145842
Alignment:
Q  1 tttgacttactttattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaa 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145982 tttgacttactttattaagggtgtatttggaaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaa 44145883  T
Q  101 aaattgaattaacagcatgatcaatgatcatgtaatacttc 141  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  44145882 aaattgaattaacagcattataaatgatcatgtaatacttc 44145842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 43961644 - 43961449
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 117  Q
    |||||||||||||   ||||| ||| ||||||||||||||  || ||||||||| |||   |||||||||||||||||||| |||||||||||| || ||    
T  43961644 agggtgtgtttggatggagggattatgaggggagggcttatttttcttttttaaattatgaacattataaaatgatttttagaaaattgaattatcaaca 43961545  T
Q  118 tgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
    |||| ||||||||| |||||||||||||||||||||     |||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  43961544 tgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcataatttaaaaaataaaagtgagccctccc 43961449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 22186950 - 22186748
Alignment:
Q  21 gtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatga 120  Q
    ||||||||||   |||||||||  |||||||| || || || ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||    
T  22186950 gtgtgtttggatggagggtttaaaaggggaggactcacttttcttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 22186851  T
Q  121 tcaatgatcatgtaatacttcaaaaacac-----ttaatttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    | |||||| || |||||||||||||||||     ||| |||||||| ||||||||| ||||| |||||||||||| ||||||||| | || |||||||||    
T  22186850 taaatgattatataatacttcaaaaacactttatttattttaaaaaaacattttacgttgtttgtaatttaaaaattaaaagtgaactctgccctccctt 22186751  T
Q  216 ccc 218  Q
    |||    
T  22186750 ccc 22186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 55080815 - 55080609
Alignment:
Q  16 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacag 115  Q
    |||||||||||||||   |||||||||||| |||||| ||||| || ||||||||| |||   |||||||||||| ||||||| |||||| ||||||||     
T  55080815 taagggtgtgtttggatggagggtttaggatgggaggacttacttttcttttttaaattacgaacattataaaataatttttagaaaatttaattaacaa 55080716  T
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    |||||| |||||||||  ||||||||||||||||||||     ||| |||| |||||||||||||||||||||||| ||||||||| ||| || || |||    
T  55080715 catgataaatgatcataaaatacttcaaaaacacttaacttattttgaaaaaacattttacattgttcgtaatttacaaaataaaaatgaaccatctcct 55080616  T
Q  211 cccttcc 217  Q
    | |||||    
T  55080615 ctcttcc 55080609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17182490 - 17182701
Alignment:
Q  15 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgattttta--aaaaattgaattaa 112  Q
    |||| |||||||||||  ||||| |||||||||||| |  |||| || ||||||||| |||  ||| ||||||||||||||||   ||||||||||||||    
T  17182490 ttaaaggtgtgtttggatagaggttttaggaggggaagatttacttttcttttttaaattattgacgttataaaatgattttttgcaaaaattgaattaa 17182589  T
Q  113 cagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcc 207  Q
    ||  ||||| ||||||||| |||||||||||||||||||||||||     |||| | ||||||| |||||||||||||||||||||||||| || |||||    
T  17182590 caatatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaatattttaccttgttcgtaatttaaaaaataaaagtaagtcctcc 17182689  T
Q  208 cctcccttcccc 219  Q
    | ||| ||||||    
T  17182690 cttcctttcccc 17182701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 4437480 - 4437633
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----a 158  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| |||||         
T  4437480 cttttttaaattatggatattataaaatgatttttaaaaaattgaattaacaacatgataattgatcatataatacttcaaaaacacttgatttattttt 4437579  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    ||| |||||||||||||||  ||||||||||||||||| ||| |||||||||||    
T  4437580 aaaaacattttacattgtttttaatttaaaaaataaaaatgaaccctcccctcc 4437633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 7977530 - 7977713
Alignment:
Q  43 ggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttc 141  Q
    |||||||||||||||| || ||||||| || |||   |||||||||||| || |||  ||||||||||||||| |||||| ||||||||| |||||||||    
T  7977530 ggaggggagggcttacttttctttttttaaattacgaacattataaaataatattttgaaaattgaattaacaacatgataaatgatcatataatacttc 7977629  T
Q  142 aaaaacacttaattt------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| |||||||      ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||    
T  7977630 aaaaacaattaatttactttaaaaaaaacattttacattcttcgtaatttaaaaaataaaattgaaccctcccctcctttcccc 7977713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 29993826 - 29993980
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----ttta 157  Q
    ||||||||| |||  |||| |||||||||||||||| ||||||||||||||| ||||||  ||||| || |||||||||||||| ||||||     ||||    
T  29993826 cttttttaaattacggacactataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaatacttaatctatttta 29993925  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| || ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  29993926 aaaaaactttttacattgttcgtaatttaaaaagtaaaagtgaaccctcccctcc 29993980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 56135965 - 56135777
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 117  Q
    |||||||||||||   ||||||||||||||||||||||||| || ||||||||| ||||||               ||||| |||||||||||||||       
T  56135965 agggtgtgtttggatggagggtttaggaggggagggcttacttttcttttttaaattaaag---------------ttttagaaaattgaattaaca--- 56135884  T
Q  118 tgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| ||||||||| |||||||||||||||||||||||||     |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  56135883 tgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaaatgaaccctcccctcc 56135784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 37761673 - 37761512
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||| | || ||||||||| |||  |||||||| |||||||||||| ||||||||||||||| |||||| |||||| || ||| ||||||    
T  37761673 ggaggggagggcttccttttcttttttaaattatggacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttca 37761574  T
Q  143 aaaacacttaattta----aaaagacattttacattgttcgtaatttaaaaaataaaagtga 200  Q
    |||||||||||||||    |||| | ||||||  |||||||||||||||||| |||||||||    
T  37761573 aaaacacttaatttattctaaaaaatattttatgttgttcgtaatttaaaaattaaaagtga 37761512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 216
Target Start/End: Original strand, 47846090 - 47846269
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||| | |||| || ||||||||| ||   ||||||||||||| ||||||| ||||||||||||| | |||||| ||| ||||| ||||||||||    
T  47846090 ggaggggagagtttacttttcttttttaaattctggacattataaaataatttttacaaaattgaattaagaacatgataaataatcatataatacttca 47846189  T
Q  143 aaaacacttaattt------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttc 216  Q
    ||||||||||||||      ||||| ||| |||||||||||| ||||||||||||||||||| | ||||||| |||||||    
T  47846190 aaaacacttaatttattttaaaaaaaacactttacattgttcataatttaaaaaataaaagtaaaccctcccatcccttc 47846269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 54576362 - 54576543
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||||| || ||||||||  |||  |||||||||||||||||| || ||||||||||||||| | |||| |||||| || ||||||||||    
T  54576362 ggaggggagggcttacttttcttttttagattacggacattataaaatgatttatagaaaattgaattaacaacgtgataaatgattatataatacttca 54576461  T
Q  143 aaaacacttaattt-------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    |||||| |||||||       ||||| ||||||||| |||||||||||||||||| ||||||||| | || | |||||||||    
T  54576462 aaaacatttaatttatttaaaaaaaaaacattttacgttgttcgtaatttaaaaattaaaagtgaactcttctctcccttcc 54576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 54001162 - 54001289
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacac------ttaattta 157  Q
    |||||||| |||  ||||||||||||| |||||||||||||||||||||   |||||| ||||||||| |||||||||||||||||      ||| ||||    
T  54001162 ttttttaaattacggacattataaaataatttttaaaaaattgaattaa---catgataaatgatcatataatacttcaaaaacacttttatttatttta 54001258  T
Q  158 aaaagacattttacattgttcgtaatttaaa 188  Q
    ||||||||||||||||||||||| |||||||    
T  54001259 aaaagacattttacattgttcgtgatttaaa 54001289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 5825085 - 5824946
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaatttaaaaag 162  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||    || |||    ||| |||||| |     
T  5825085 cttttttgaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataaccaatccaaacattttattttaaacaa 5824986  T
Q  163 acattttacattgttcgtaatttaaaaaataaaagtgagc 202  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  5824985 acattttacatttttcgtaatttaaaaaataaaaatgagc 5824946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 34995247 - 34995099
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa 153  Q
    ||||| || ||||||||| |||  || ||||| |||||||||||| |||||||||||||   |||||| ||| ||| | |||||||||||||||||||||    
T  34995247 cttacttttcttttttaaattacggatattatcaaatgatttttagaaaattgaattaaa--catgataaataatcttataatacttcaaaaacacttaa 34995150  T
Q  154 tttaa-----aaagacattttacattgttcgtaatttaaaaaataaaagtg 199  Q
    ||||      ||| |||||| ||||||||||||||||||||||||||||||    
T  34995149 tttattttagaaaaacatttcacattgttcgtaatttaaaaaataaaagtg 34995099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 9030391 - 9030272
Alignment:
Q  77 agacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta------aaaagacatttta 170  Q
    |||||||||||||||||||||| |||||| |||||| |  ||||| |||||| || |||||||| ||||||||||||||||      |||| ||||||||    
T  9030391 agacattataaaatgatttttagaaaatttaattaataaaatgataaatgattatataatactttaaaaacacttaatttattgtttaaaaaacatttta 9030292  T
Q  171 cattgttcgtaatttaaaaa 190  Q
    | ||||||||||||||||||    
T  9030291 cgttgttcgtaatttaaaaa 9030272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 21694929 - 21695038
Alignment:
Q  47 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaa 146  Q
    |||||||||||| || ||||||||| |||  |||| ||||||||| ||||||| |||||||| |||||  ||||| ||||||||| |||||||||||  |    
T  21694929 gggagggcttacttttcttttttaaattacggacactataaaatggtttttaataaattgaaataacaaaatgat-aatgatcatataatacttcaatca 21695027  T
Q  147 cacttaattta 157  Q
    |||||||||||    
T  21695028 cacttaattta 21695038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 11089756 - 11089619
Alignment:
Q  15 ttaagggtgtgtttgggaagagggtttaggaggggagg---gcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatta 111  Q
    ||||||||||||||||   |||| ||||| |||||| |   | ||||||| ||||||||| |||  ||| |||||||||  |||||| ||||||||||||    
T  11089756 ttaagggtgtgtttggattgaggatttagaaggggaagatggtttacatttcttttttaaattacggactttataaaatattttttagaaaattgaatta 11089657  T
Q  112 acagcatgatcaatgatcatgtaatacttcaaaaacac 149  Q
    ||| ||| || ||||||||| || ||||||||||||||    
T  11089656 acaacatcataaatgatcatatattacttcaaaaacac 11089619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 14539445 - 14539367
Alignment:
Q  79 acattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    ||||||||||||| || ||| |||||| |||||| | ||| || ||||||||| |||||||||||||||||||||||||    
T  14539445 acattataaaatgtttgttagaaaattaaattaagaacataataaatgatcatataatacttcaaaaacacttaattta 14539367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 51329983 - 51329847
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----a 158  Q
    |||||||| |||  || |||||||||| |||| || |||||||||||||||  ||||| |||||| || |||||||||||||| ||||||||||     |    
T  51329983 ttttttaaattagggatattataaaataatttatagaaaattgaattaacaaaatgataaatgattatataatacttcaaaaa-acttaatttattttaa 51329885  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    ||| |||||||   |||||||||||||||||| |||||    
T  51329884 aaaaacattttgtgttgttcgtaatttaaaaattaaaa 51329847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 44145844 - 44145801
Alignment:
Q  176 ttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  44145844 ttcgtaatttaaaaaataaaagtgagtcctcccctcccttcccc 44145801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 55510338 - 55510204
Alignment:
Q  83 tataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgtt 177  Q
    |||||||| ||||| ||||||||||| ||||| |||||| ||||||||| ||||||||||   ||||||||     |||||||| ||||||||||||||     
T  55510338 tataaaat-attttaaaaaaattgaaataacaacatgatgaatgatcatataatacttcagtcacacttaatttattttaaaaaaacattttacattgtc 55510240  T
Q  178 cgtaatttaaaaaataaaagtgagccctcccctccc 213  Q
      ||| |||||||  |||||| || |||||||||||    
T  55510239 tttaaattaaaaatgaaaagtaagtcctcccctccc 55510204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 51075268 - 51075218
Alignment:
Q  81 attataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 131  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  51075268 attataaaataatttttaaaaaattgaattaacaacatgataaatgatcat 51075218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 41227614 - 41227518
Alignment:
Q  118 tgatcaatgatcatgtaatacttcaaaaacacttaattta--aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| ||||||||| |||||||||||  |||||||||||   ||| ||||||||| ||||||| |||||||||||| | |||| |||||| ||||||    
T  41227614 tgataaatgatcatataatacttcaatcacacttaattttttaaatgacattttatattgttcataatttaaaaaagagaagtaagccctgccctcc 41227518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 51074459 - 51074380
Alignment:
Q  136 tacttcaaaaacacttaattta-------aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
    ||||||||||||||||||||||       |||| ||| |||||| ||||| |||||||||||||||||||||||||||||    
T  51074459 tacttcaaaaacacttaatttattaaaaaaaaaaacactttacaatgttcataatttaaaaaataaaagtgagccctccc 51074380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 49735557 - 49735496
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||| |  |||| |||||||||||||  |||||||| ||||||||||||||||||    
T  49735557 aaaagacatttcatgttgtccgtaatttaaaaatgaaaagtgaaccctcccctcccttcccc 49735496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 21694973 - 21694918
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||||||||||| |||||| ||||||||| ||||||||||    
T  21694973 cattttatagtgtccgtaatttaaaaaagaaaagtaagccctcccgtcccttcccc 21694918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 54576410 - 54576355
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  54576410 cattttataatgtccgtaatctaaaaaagaaaagtaagccctcccctcccttcccc 54576355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 35543333 - 35543411
Alignment:
Q  34 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 112  Q
    ||||||||| || |||||  ||||  || ||||||||| |||   |||||||||||| |||||||||||||||||||||    
T  35543333 gagggtttaagaagggagaacttatttttcttttttaaattaggaacattataaaataatttttaaaaaattgaattaa 35543411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 35543448 - 35543502
Alignment:
Q  154 tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
    |||||||| | |||||||  |||||||||||| |||||||||||||||| |||||    
T  35543448 tttaaaaaaatattttactatgttcgtaattttaaaaataaaagtgagctctccc 35543502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 47846417 - 47846458
Alignment:
Q  157 aaaaagacattttacattgttcgtaatttaaaaaataaaagt 198  Q
    ||||| ||| |||||||||||| |||||||||||||||||||    
T  47846417 aaaaaaacactttacattgttcataatttaaaaaataaaagt 47846458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 11842325 - 11842401
Alignment:
Q  24 tgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaa 100  Q
    |||||||  ||||||||||| |||||||| ||||| || |||||| || ||| ||||| ||||||||  ||||||||    
T  11842325 tgtttggatagagggtttagaaggggaggacttacttttctttttcaaattacagacactataaaatattttttaaa 11842401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 17938164 - 17938256
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    ||||||| |||  ||||||||  |||| |||||||||| || || ||| | |||||| || |||||| |||||||||||  ||||||||||||    
T  17938164 tttttaaattatggacattatggaatgttttttaaaaatttaaaataataacatgataaacgatcatataatacttcaatcacacttaattta 17938256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 32192891 - 32192847
Alignment:
Q  163 acattttacattgttcgtaatttaaaaaataaaagtgagccctcc 207  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||    
T  32192891 acattttacattattgataatttaaaaaataaaagtgaaccctcc 32192847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 47433734 - 47433857
Alignment:
Q  34 gagggtttaggagggga-gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatg 132  Q
    ||||||||||||||||| ||| |||  || | ||||||| |||  ||||||||  |||| ||||||||||||| || ||| | ||| || || ||||||     
T  47433734 gagggtttaggaggggaagggtttaattttcgtttttaaattatggacattatggaatgttttttaaaaaattaaaataataacat-ataaacgatcata 47433832  T
Q  133 taatacttcaaaaacacttaattta 157  Q
    |||||||||||  ||||||||||||    
T  47433833 taatacttcaatcacacttaattta 47433857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 8390 - 8182
Alignment:
Q  15 ttaagggtgtgttt-gggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaa 108  Q
    |||||||||||||| |||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8390 ttaagggtgtgtttagggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaa 8291  T
Q  109 ttaacagcatgatcaatgatcatgtaatacttcaaaaacacttaat-----ttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagcc 203  Q
    |||||| |||||| ||||||||| |||||||||||||||| |||||     |||||||||||||| |||||||||||||||||||||||||||||||||     
T  8290 ttaacaacatgattaatgatcatataatacttcaaaaacagttaatttatcttaaaaagacatttcacattgttcgtaatttaaaaaataaaagtgagct 8191  T
Q  204 ctcccctcc 212  Q
    |||| ||||    
T  8190 ctcctctcc 8182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 33519257 - 33519076
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||||| |||| || ||| ||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||    
T  33519257 ggaggggagggattacttttcttctttaaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttca 33519158  T
Q  143 aaaacacttaattt-----aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||     ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519157 aaaacacttaatttatttcaaaaaaacattttatattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 33519076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 37926015 - 37925869
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttaca 172  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||  ||||| || |||||||||||||||||||||     || ||||| ||||||||||    
T  37926015 gacattataaaatgatgtttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaacacttaatctatttaaaaaaaacattttaca 37925916  T
Q  173 ttgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  37925915 ttgttcgtaatttaaaaaataaaagtgaaccctcccctcccttcccc 37925869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 36267588 - 36267769
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||||  || ||||||||| |||  || |||||||||||||||||| |||||||||| ||||  ||||| ||||||||| ||||||||||    
T  36267588 ggaggggagggcttagttttcttttttaaattacggatattataaaatgatttttagaaaattgaatcaacaatatgataaatgatcatataatacttca 36267687  T
Q  143 aaaacact-----taatttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||     || ||| |||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  36267688 aaaacacttactatattttgaaaaaacattttacattggttgtaatttaaaaaataaaaatgagccctcccctcccttcccc 36267769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 39646687 - 39646499
Alignment:
Q  34 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 133  Q
    ||||||||||||||||| | || || ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| ||||||  ||||| || |    
T  39646687 gagggtttaggaggggatgactcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatat 39646588  T
Q  134 aatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    ||||||||||||||| ||||||||     |||| | |||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  39646587 aatacttcaaaaacagttaatttattttaaaaatatattttacattgttcataatttaaaaaataaaagtgattcctcccctcccttcc 39646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 48013740 - 48013531
Alignment:
Q  15 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 114  Q
    ||||||||||||||||   ||||| |||||||||||| |||||| || | ||||||| | | |||| ||||||||| ||||||| |||||||||||||||    
T  48013740 ttaagggtgtgtttggatggagggattaggaggggagagcttacttttcgtttttaaatcacagactttataaaataatttttagaaaattgaattaaca 48013641  T
Q  115 gcatgatcaatgatcatgt-aatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
     |||||| ||||||||| | |||  |||||||||||||||     |||||||| ||||||||||||||||||||||| ||||||||||| || | |||||    
T  48013640 acatgataaatgatcatatgaatttttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaattt-aaaaataaaagcgaacgctccc 48013542  T
Q  209 ctcccttcccc 219  Q
    |||||||||||    
T  48013541 ctcccttcccc 48013531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 28074158 - 28074322
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----- 157  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||         
T  28074158 cttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacctgataaatgatcatataatacttcaaaaacacttaatttatttaa 28074257  T
Q  158 ---aaaagacattttacattgttcgtaatttaaa--aaataaaagtgagccctcccctcccttcc 217  Q
       |||| |||||||||||||||||| ||| |||  |||||||||||| ||||||||| ||||||    
T  28074258 aacaaaaaacattttacattgttcgtgattaaaaataaataaaagtgatccctccccttccttcc 28074322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 48881593 - 48881768
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||| ||||||| || ||||||||| |||  ||||||||||||| ||||| | ||||||||||||||| |||||| |||||| || |||| |||||    
T  48881593 ggaggggatggcttacttttcttttttaaattacggacattataaaataattttcagaaaattgaattaacaacatgataaatgattatataatgcttca 48881692  T
Q  143 aaaacacttaa------tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| ||||||      |||||||| ||||||||| ||||| |||||||||||| ||||||||| || ||||||||    
T  48881693 aaaatacttaatttatttttaaaaaaacattttacgttgtttgtaatttaaaaattaaaagtgaaccttcccctcc 48881768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 35422168 - 35422015
Alignment:
Q  48 ggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaac 147  Q
    |||||| |||| || |||||| || |||  ||||||||||||| ||||||| ||||||||||||||| ||| || ||| ||||| | |||||||||||||    
T  35422168 ggagggtttacttttctttttaaaattacggacattataaaataatttttagaaaattgaattaacaacataataaataatcatatgatacttcaaaaac 35422069  T
Q  148 acttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    ||||||     |||||||| ||||||||||||||| ||||||||||||||||||    
T  35422068 acttaatttattttaaaaaaacattttacattgtttgtaatttaaaaaataaaa 35422015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 37620983 - 37620802
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||||| || | || ||||||||| |||  ||||||||||||||||||||  |||||||||||| || |||||| || ||| || ||||||||||    
T  37620983 ggaggggagggtttgcttttcttttttaaattatggacattataaaatgatttttggaaaattgaattatcaacatgataaaagattatataatacttca 37620884  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||| ||||||||     ||||  ||||||||||||||| |||||| ||||  |||||||| | ||||||||||||||||    
T  37620883 aaaacatttaatttattttaaaaaatcattttacattgttcataatttgaaaataaaaagtgaactctcccctcccttcccc 37620802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21857560 - 21857375
Alignment:
Q  38 gtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 137  Q
    |||||||||| |||| ||||| || || ||||||||   | |||||||||||||||||||| ||||||||||||||| |||||| |||||||||  ||||    
T  21857560 gtttaggaggagaggacttacttttctcttttaattacga-acattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatacaata 21857462  T
Q  138 cttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
     |||||||||||||||     ||||||||   |||||| ||||||| ||||||||||||||||| ||| | |||  |||||||||||    
T  21857461 tttcaaaaacacttaatttattttaaaaaaggattttatattgttcttaatttaaaaaataaaaatgaactctctactcccttcccc 21857375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 31364080 - 31364233
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||| |||||| || ||||| ||| |||  ||||||||||||||||||| | |||||||||| |||  ||| |   |||||||| ||||||||||    
T  31364080 ggaggggagagcttacttttcttttctaaattacggacattataaaatgattttaagaaaattgaatcaacgacataa---atgatcatataatacttca 31364176  T
Q  143 aaaacac---ttaatttaaaaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    |||||||   ||| |||||||| |||||||||||||||| |||||||||||||||||    
T  31364177 aaaacacaacttattttaaaaaaacattttacattgttcctaatttaaaaaataaaa 31364233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 12670928 - 12671034
Alignment:
Q  100 aaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataa 194  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |     |||| |||||| |||||||||||| ||||||||||||    
T  12670928 aaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaattcatttacaaaaaacatttcacattgttcgtagtttaaaaaataa 12671027  T
Q  195 aagtgag 201  Q
    |||||||    
T  12671028 aagtgag 12671034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 23116269 - 23116408
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaa-tgatttttaaaaaattgaattaacagc 116  Q
    |||||||||||||   |||||||||||| |||||||||||| || ||||||||| ||| ||||| ||||||| || || ||||||||||||| || || |    
T  23116269 agggtgtgtttggatggagggtttaggaagggagggcttacttttcttttttaaattacagacactataaaagtgtttattaaaaaattgaaatagcaac 23116368  T
Q  117 atgatcaatgatcatgtaatacttcaaaaacacttaattt 156  Q
    ||||| |||||| || |||||||||||  |||||||||||    
T  23116369 atgataaatgattatataatacttcaatcacacttaattt 23116408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 48015394 - 48015239
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt------aa 158  Q
    ||||||| ||| |||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||| ||||  ||||||||||||||||||      ||    
T  48015394 tttttaaattacagactttataaaataatttttggaaaattgaattaacaacatgataaatgatcatataatttttcaaaaacacttaatttatttaaaa 48015295  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    ||| ||||||||||||    ||||||||||| ||||||| || | |||||||||||||||    
T  48015294 aaaaacattttacatt----gtaatttaaaagataaaagcgaacgctcccctcccttccc 48015239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 3215934 - 3216048
Alignment:
Q  82 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgt 176  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||||||| |||||||||| ||| |||| |||||     |||| ||||||||||||||    
T  3215934 ttataaaatgatttttagaaaattgaattaacaatatgataaatgatcatataatacttcataaatacttgatttattttgaaaaaacattttacattgt 3216033  T
Q  177 tcgtaatttaaaaaa 191  Q
    || ||||||||||||    
T  3216034 tcataatttaaaaaa 3216048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 16833867 - 16833733
Alignment:
Q  80 cattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt----------------aaaaaga 163  Q
    |||||||| || ||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||                ||||| |    
T  16833867 cattataatataatttttataaaattgaattaataacatgataaatgatcatgtaatacttcaaaaacacttaatttttttttaaaaaaaaaaaaaaaaa 16833768  T
Q  164 cattttacattgttcgtaatttaaaaaataaaagt 198  Q
    |||||||||||||||||||||||||||||||||||    
T  16833767 cattttacattgttcgtaatttaaaaaataaaagt 16833733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 8122328 - 8122175
Alignment:
Q  72 tttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat----gtaatacttcaaaaacacttaa-----tttaaaaag 162  Q
    |||| |||||||||||||| ||||||| |||||||||||||||  ||||| ||| |||||     |||||||||||||||| ||||     |||||||      
T  8122328 tttatagacattataaaataatttttagaaaattgaattaacaagatgataaattatcatataattaatacttcaaaaacaattaatttattttaaaaca 8122229  T
Q  163 acattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttc 216  Q
    | |||||| || ||||||||||||||||||||||||||| | ||||||||||||    
T  8122228 atattttatatggttcgtaatttaaaaaataaaagtgagtcttcccctcccttc 8122175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 3143673 - 3143526
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa----cagcatgatcaatgatcatgtaatacttcaaaaacacttaa----- 153  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||    ||  ||||| ||||||||| |||||||||||||| ||||||         
T  3143673 cttttttaaattaatgacattataaaataatttttaaaaaattgaattaattaacaaaatgataaatgatcatataatacttcaaaaaaacttaatttat 3143574  T
Q  154 tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgag 201  Q
    |||| ||| | |||||||||||||  |||||||||||| |||| ||||    
T  3143573 tttataaaaatattttacattgtttataatttaaaaaaaaaaattgag 3143526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 12682854 - 12682929
Alignment:
Q  133 taatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagcc 203  Q
    |||||||||||||||||||||||||     |||| ||||||||||||||||||| |||||||||||||||||||||    
T  12682854 taatacttcaaaaacacttaatttatttaaaaaatacattttacattgttcgtagtttaaaaaataaaagtgagcc 12682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 30592292 - 30592388
Alignment:
Q  47 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    |||||||||||| || ||||||||| ||| ||||| |||||||||||||||||||||||||| |||    ||||| ||| ||||| |||||||||||    
T  30592292 gggagggcttacttttcttttttaaattacagacactataaaatgatttttaaaaaattgaaataatcatatgataaataatcatataatacttcaa 30592388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 2087785 - 2087892
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaa----tgatcatgtaatacttcaaaaacac 149  Q
    ||||| || ||||||||| |||  || |||||||||| |||||||||||| |||||||||| |||||| ||    ||||||| ||||||||||||||||     
T  2087785 cttacttttcttttttaaattacggatattataaaataatttttaaaaaaatgaattaacaacatgataaataattgatcatataatacttcaaaaacat 2087884  T
Q  150 ttaattta 157  Q
    | ||||||    
T  2087885 taaattta 2087892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 17853106 - 17852966
Alignment:
Q  16 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacag 115  Q
    |||||||||||||||   ||||||||||||||||||||||||| || | ||||||| |||    || ||| ||| | ||||||||||  | || |||||     
T  17853106 taagggtgtgtttggatggagggtttaggaggggagggcttacttttcatttttaaattacgagcactatgaaaag-tttttaaaaagataaaataacaa 17853008  T
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    |||||| || |||||| |||||| ||||  ||||||||||||    
T  17853007 catgataaacgatcatataatacctcaatcacacttaattta 17852966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 28074186 - 28074131
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||||||||||| |||||||||  ||||||||||||||||    
T  28074186 cattttataatgtccgtaatttaaaaaagaaaagtgagttctcccctcccttcccc 28074131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 41497065 - 41497172
Alignment:
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaatttaa-----aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    |||||| ||||||||| |||| ||||||  ||||||||||||      ||| |||| ||| || || |||||||||||||| |||||| | |||||||||    
T  41497065 catgataaatgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccct 41497164  T
Q  211 cccttccc 218  Q
    ||||||||    
T  41497165 cccttccc 41497172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 18795746 - 18795788
Alignment:
Q  154 tttaaaaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    |||||||| |||||||| |||||||||||||||||||| ||||    
T  18795746 tttaaaaaaacattttatattgttcgtaatttaaaaaagaaaa 18795788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 48881640 - 48881586
Alignment:
Q  165 attttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||| | ||| |||||||||||||| |||||| |||| |||||||||||||||    
T  48881640 attttataatgtccgtaatttaaaaaagaaaagtaagccatcccctcccttcccc 48881586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 36267622 - 36267581
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||| | ||||||||||||||||||||    
T  36267622 cgtaatttaaaaaagaaaactaagccctcccctcccttcccc 36267581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 39856040 - 39856081
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||||| | ||||||||||||||||||    
T  39856040 cgtaatttaaaaaagaaaagtaaaccctcccctcccttcccc 39856081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 39646630 - 39646678
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    ||||||| | ||| |||||||||||||||||||||||| | ||||||||    
T  39646630 cattttataatgtccgtaatttaaaaaataaaagtgagtcatcccctcc 39646678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 48147404 - 48147448
Alignment:
Q  167 tttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 211  Q
    |||||||| || |||||||||||||||||||||||| ||| ||||    
T  48147404 tttacattatttgtaatttaaaaaataaaagtgagctctctcctc 48147448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 10204785 - 10204604
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||| | | || ||||||||| ||||||||||    
T  10204785 ggaggggaggacttacttttcttttttaatttacagacattaaaaaatgatttttaaaaaattgaattaacaacgtaataaatgatcatataatacttca 10204686  T
Q  143 aaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||     |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  10204685 aaaacacttaatttattttaaaaagacattttacattgttggtaatttaaaaaataaaagtgagccctcacctcccttcccc 10204604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 15986659 - 15986840
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||| ||||  || ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||    ||||||||| |||||||| |    
T  15986659 ggaggggaggacttaattttcttttttaatttacagacattataaaatgacttttaaaaaattgaattaacaacatttaaaatgatcatataatacttta 15986758  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  15986759 aaaacacttaatttattttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcctcttccttcccc 15986840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 216
Target Start/End: Original strand, 33744228 - 33744406
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||| || | |||||    
T  33744228 ggaggggagggtttacttttcttttttaaattatggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatatatttcttca 33744327  T
Q  143 aaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttc 216  Q
    |||||||||||     |||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  33744328 aaaacacttaatttattttaaaaaaacattttgaattgttcgtaatttaaaatataaaagtgagccctcccctcccttc 33744406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 8551427 - 8551634
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggagggga-gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 116  Q
    |||||||||||||  ||||||||||  |||| | ||| |||||||  ||| ||||  || ||||||||||||||||||||||||||||| |||||||| |    
T  8551427 agggtgtgtttggatagagggtttaatagggaaagggtttacatttatttcttaaactacagacattataaaatgatttttaaaaaattaaattaacaac 8551526  T
Q  117 atgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 211  Q
    || || ||||||||| |||||||| ||||||||||||||||     |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  8551527 attataaatgatcatataatactttaaaaacacttaatttatttttaaaacacattttacattgctcgtaatttaaaaaataaaagtgagaccccccctc 8551626  T
Q  212 ccttcccc 219  Q
     |||||||    
T  8551627 tcttcccc 8551634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 34981019 - 34980838
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||| ||||| || ||||||||| |||  |||||||||||||||||| || |||||||| |||||| |||||| |||||| || ||||||||||    
T  34981019 ggaggggaggacttacttttcttttttaaattatggacattataaaatgatttatagaaaattgagttaacaacatgataaatgattatataatacttca 34980920  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||     |||| | ||||||| |||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34980919 aaaacacttaatttattttaaaaaaatattttacgttgttcgtaatttaaaaattaaaagtgaacccttccctcccttcccc 34980838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 40305670 - 40305878
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggagggga-----gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 112  Q
    |||||||||||||   |||||||||||||||||     |||||||  || ||||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  40305670 agggtgtgtttggatggagggtttaggaggggaagggagggcttagttttcttttttaaattacagacattataaaataatttttagaaaattgaattaa 40305769  T
Q  113 cagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcc 207  Q
    ||  ||||| ||||||||| || |||||||||||| |||||||||     |||| ||||||||||||| |||||||||||||||||||| ||||  ||||    
T  40305770 caatatgataaatgatcatatagtacttcaaaaacccttaatttattttgaaaaaacattttacattggtcgtaatttaaaaaataaaaatgagttctcc 40305869  T
Q  208 cctcccttc 216  Q
    |||||||||    
T  40305870 cctcccttc 40305878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 10043461 - 10043280
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||| || || || ||||||||| |||   | |||||||||||||||||| ||||||||||||||| ||| || ||| ||||| ||||||||||    
T  10043461 ggaggggaggactcacttttcttttttaaattacgaatattataaaatgatttttagaaaattgaattaacaacattataaataatcatataatacttca 10043362  T
Q  143 aaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||     |||||||  | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  10043361 aaaacacttaatttcttttaaaacaatattttacattgttcgtaatttaaaaaataaaagtgagtcatcccctcccttcccc 10043280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 5688572 - 5688448
Alignment:
Q  93 tttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaat-----ttaaaaagacattttacattgttcgtaatttaa 187  Q
    |||||| ||||||||||||||| ||||||  ||||| || ||||||||||||||||||||||     ||||||| |||||||||||||||||||||||||    
T  5688572 tttttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaacacttaatctattttaaaaaaacattttacattgttcgtaatttaa 5688473  T
Q  188 aaaataaaagtgagccctcccctcc 212  Q
    ||||||||||||| |||||||||||    
T  5688472 aaaataaaagtgaaccctcccctcc 5688448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 21581135 - 21580979
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----a 158  Q
    |||||||| |||  ||| |||| |||| ||||||| ||||||||||||||| |||||| |||| |||| | |||||||||||||||||||||||     |    
T  21581135 ttttttaaattatggacgttatgaaataatttttagaaaattgaattaacaacatgataaatgttcatatgatacttcaaaaacacttaatttattttaa 21581036  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    ||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  21581035 aaaaatattttacattgttcgtaatttagaaaataaaagtgacccctcccctccctt 21580979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 6382525 - 6382422
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa 153  Q
    ||||| || ||||| |||||||  |||||||||||||  |||||| ||||||||||||||| |||||| |||| |||||| |||||||||||| ||||||    
T  6382525 cttacttttcttttctaatttacggacattataaaatactttttagaaaattgaattaacaacatgataaatgttcatgtgatacttcaaaaagacttaa 6382426  T
Q  154 ttta 157  Q
    ||||    
T  6382425 ttta 6382422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 6597845 - 6597984
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----a 158  Q
    ||||||||| |||  |||||| |||||||||||||  ||||||||| ||||| |||||| ||||||||| ||||||       ||||||||||||    |    
T  6597845 cttttttaaattacggacattgtaaaatgattttttgaaaattgaaataacaacatgataaatgatcatataatac-------acacttaatttatttta 6597937  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccct 205  Q
    ||| | |||||||||| ||| ||||||||||||||||| ||||||||    
T  6597938 aaaaatattttacattattcataatttaaaaaataaaaatgagccct 6597984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 10043055 - 10043156
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa 153  Q
    ||||| || |||| |||| ||| | |||||| | ||| |||| || ||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  10043055 cttacttttctttcttaaattataaacattaaagaattatttctagaaaattgaattaacaacatgataaatgatcatataatactttaaaaacacttaa 10043154  T
Q  154 tt 155  Q
    ||    
T  10043155 tt 10043156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 12036007 - 12036084
Alignment:
Q  79 acattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    |||||||||||| ||| ||| |||||||||||| || |||||| ||| ||||| |||||||| ||||||||||||||||    
T  12036007 acattataaaattattattagaaaattgaatta-caacatgataaattatcatataatacttaaaaaacacttaattta 12036084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 6382393 - 6382357
Alignment:
Q  165 attttacattgttcgtaatttaaaaaataaaagtgag 201  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6382393 attttacattgttcgtgatttaaaaaataaaagtgag 6382357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 10043425 - 10043464
Alignment:
Q  176 ttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  10043425 ttcgtaatttaaaaaagaaaagtgagtcctcccctccctt 10043464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 15858902 - 15858953
Alignment:
Q  165 attttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttc 216  Q
    ||||| |||||||||||||||| |||||||| ||||| | ||||||||||||    
T  15858902 attttccattgttcgtaatttagaaaataaatgtgagtcatcccctcccttc 15858953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 1657968 - 1658029
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||| |||||||| | ||| |||||||||||||  |||||| | ||||||||||||||||||    
T  1657968 aaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccc 1658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 13634882 - 13634927
Alignment:
Q  174 tgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||  |||||| | ||||||||||||||||||    
T  13634882 tgttcgtaatttaaaaatgaaaagtaacccctcccctcccttcccc 13634927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 14245177 - 14245116
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||| |||||| ||| ||| |||||||||||||| |||||| |  |||||||||||||||||    
T  14245177 aaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccc 14245116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 7544205 - 7544165
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    |||||||||||||| |||| | |||||||||||||||||||    
T  7544205 cgtaatttaaaaaagaaaatttagccctcccctcccttccc 7544165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 11437108 - 11437048
Alignment:
Q  83 tataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    ||||||||| ||||||||||||| || |||||||  ||| ||||||| | |||||||||||    
T  11437108 tataaaatgttttttaaaaaattaaaataacagcgcgataaatgatcgtataatacttcaa 11437048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 40858798 - 40858604
Alignment:
Q  19 gggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcat 118  Q
    ||||||||||||   |||||||||||||||||||| |||  || ||||||||| |||  |||||||||||||||| |||  ||||||||||||||| |||    
T  40858798 gggtgtgtttggatggagggtttaggaggggagggtttagttttcttttttaaattacggacattataaaatgatcttttgaaaattgaattaacaacat 40858699  T
Q  119 gatcaatgatcatgtaatacttcaaaaacac-----ttaatttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
    ||| ||||||||| |||||||||||||||||     ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40858698 gataaatgatcatataatacttcaaaaacactaaatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 40858604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 34641199 - 34641027
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||||||||| || ||||||||| |||  ||||||||||||||||||  | ||||||||||||||| |||||| ||||||||| ||||||||||    
T  34641199 ggaggggagggcttacttttcttttttaaattacggacattataaaatgattt--agaaaattgaattaacaacatgataaatgatcatataatacttca 34641102  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||||||||||||||     ||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  34641101 aaaacacttaatttattttaaaaaatccttttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 34641027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 48683848 - 48683647
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattc-cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 116  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||  ||||||||| |||   ||||||||||||||||||||  |||||||||||||| |    
T  48683848 agggtgtgtttggatagagggtttaggaggggagggtttattttttcttttttaaattacgaacattataaaatgatttttaggaaattgaattaacaac 48683749  T
Q  117 at-gatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    || ||| ||||||||| ||||| |||||||||||||||||||     |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  48683748 attgataaatgatcatataatatttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaagaaataaaagtgagtcctcccct 48683649  T
Q  211 cc 212  Q
    ||    
T  48683648 cc 48683647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 41414313 - 41414110
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagc 116  Q
    |||||||||||||   | |||||||||||||||| | |||| || ||||||| || | |  ||||||||||||||||||||| |||||||| |||||| |    
T  41414313 agggtgtgtttggatggtgggtttaggaggggagtgtttacttttctttttttaaatcagggacattataaaatgatttttagaaaattgagttaacaac 41414214  T
Q  117 atgatcaatgatcatgtaatacttcaaaaac-----acttaatttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 211  Q
    ||||| ||||||||| |||||||||||||||     | ||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  41414213 atgataaatgatcatataatacttcaaaaacgcttgatttattttaaaaaaacattttaccttgttcataatttaaaaaataaaagtgagccctcccctc 41414114  T
Q  212 cctt 215  Q
    ||||    
T  41414113 cctt 41414110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 16884010 - 16884169
Alignment:
Q  45 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaa 144  Q
    ||||||||||||||||| ||||||||||||| | | || ||||||  | |||||||||||||||| |||| |||||| ||||||||| ||||||||||||    
T  16884010 aggggagggcttacatttcttttttaatttacaaatat-ataaaaaaaattttaaaaaattgaat-aacaacatgataaatgatcatataatacttcaaa 16884107  T
Q  145 aacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgag 201  Q
    |||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||    
T  16884108 aacacttaatttattttaaaaagacattttacattgttcgtaacttaaaaaataaaagtgag 16884169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 10943669 - 10943822
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----ttta 157  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| ||| || ||| || || |||||||||||||||||||||     ||||    
T  10943669 cttttttaaattatagatattataaaatgatttttagaaaattgaattaacaacataataaataattatataatacttcaaaaacacttaatttatttta 10943768  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 211  Q
    |||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  10943769 aaaaaacattttgcattgttcgtaatttaaaaattaaaagtgaaccctcccctc 10943822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 26136006 - 26135827
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||| |||||| |||| || ||||||||| |||  ||||||||||||| ||||||  |||||||||||||||  ||||| ||| || || ||||||||||    
T  26136006 ggagtggagggtttacttttcttttttaaattacggacattataaaataattttttgaaaattgaattaacaatatgataaataattatataatacttca 26135907  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    |||||||||||||||     |||| |||||||||||||||| |||||||||||||||||||||| |||||| || |||||    
T  26135906 aaaacacttaatttatttttaaaaaacattttacattgttcataatttaaaaaataaaagtgagtcctcccttctcttcc 26135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 17474261 - 17474422
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----- 157  Q
    ||||||||| |||  ||||||||||||| |||||| ||||||||||||||||  ||||| ||| ||||  |||||||||||||||||||||||||         
T  17474261 cttttttaaattacggacattataaaataattttttaaaaattgaattaacaatatgataaataatcaaataatacttcaaaaacacttaatttattttt 17474360  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||| | |||||||||| ||||||||||||||||||||||| | | ||||||||||||||||    
T  17474361 aaaaaatattttacattattcgtaatttaaaaaataaaagttaactctcccctcccttcccc 17474422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 21090129 - 21090285
Alignment:
Q  66 ttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaa 160  Q
    |||||| ||| ||| ||||||||| |||||||  ||||||||||||||| ||||||  || ||||| |||||||||||||||||||||||||     |||    
T  21090129 ttttaaattacagatattataaaacgattttttgaaaattgaattaacaacatgatatattatcatataatacttcaaaaacacttaatttattttaaaa 21090228  T
Q  161 agacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    | | |||||||||||||| |||||||||||||||||||||| |||| ||||||||||    
T  21090229 aaatattttacattgttcataatttaaaaaataaaagtgagtcctctcctcccttcc 21090285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 42772250 - 42772127
Alignment:
Q  34 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 133  Q
    ||||||||||||||||| || |||| || ||| || || |||  ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||| |    
T  42772250 gagggtttaggaggggaaggtttactttgcttcttaaaattacggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatat 42772151  T
Q  134 aatacttcaaaaacacttaattta 157  Q
    ||||||||||||||||||||||||    
T  42772150 aatacttcaaaaacacttaattta 42772127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 8432297 - 8432462
Alignment:
Q  44 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    ||||||||| ||||| ||  |||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||| ||  | |||||||||||    
T  8432297 gaggggaggacttacttt--tttttttaattacagacattataaaatgatttttacaaaattgaattaacaacatgataaataattttataatacttcaa 8432394  T
Q  144 aaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctc 206  Q
    ||||||||||     |||||||| ||||||| ||||||||||| |||||||| ||||| ||| |||||    
T  8432395 aaacacttaattcattttaaaaaaacatttttcattgttcgtagtttaaaaattaaaattgaaccctc 8432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 18086019 - 18086202
Alignment:
Q  47 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat-caatgatcatgtaatacttcaaaa 145  Q
    ||||| |||||| || ||||||||| ||| ||||||||||||||| |||||| ||||||||||||||| ||| ||  |||||||||  ||||||||||||    
T  18086019 gggagagcttacttttcttttttaaattacagacattataaaatgttttttagaaaattgaattaacaacataataaaatgatcataaaatacttcaaaa 18086118  T
Q  146 acacttaattt----------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||          ||||| ||| ||||||||||| |||||||||||||||| |||||||| | ||||||| |||||    
T  18086119 acacttaatttatttgagaaaaaaaaaacaatttacattgttagtaatttaaaaaataatagtgagccttaccctcccatcccc 18086202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 46978594 - 46978462
Alignment:
Q  85 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcg 179  Q
    |||||||||||||| |||||| |||||||| |||||| |||||| || |||||||||||||||| ||||     |||||||| ||||||||||  |||||    
T  46978594 taaaatgatttttataaaatttaattaacaacatgataaatgattatataatacttcaaaaacatttaatttattttaaaaaaacattttacaccgttcg 46978495  T
Q  180 taatttaaaaaataaaagtgagccctcccctcc 212  Q
    ||||||||||| ||||||||| |||||||||||    
T  46978494 taatttaaaaattaaaagtgaaccctcccctcc 46978462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 44412528 - 44412389
Alignment:
Q  85 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcg 179  Q
    |||||||||||||  ||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||     |||| |  ||||||||||||||    
T  44412528 taaaatgattttttgaaaattgaattaacaacatgataaatcatcatataatacttcaaaaacacttaatttattttaaaaaaatgttttacattgttcg 44412429  T
Q  180 taatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||  |||| |||| ||||||||| |||||||    
T  44412428 taatttaaaaataaaaaatgagtcctcccctctcttcccc 44412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 42699669 - 42699821
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aa 159  Q
    ||||||| |||  ||||||||||||| | ||||| |||||||||||| ||  ||||| ||||||||| |||||||||||||||||||||||||      |    
T  42699669 tttttaaattatggacattataaaataaattttagaaaattgaattatcaatatgataaatgatcatataatacttcaaaaacacttaatttatttttta 42699768  T
Q  160 aagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    || | |||||| |||||||||||||||||||  ||||||||| ||||||||||    
T  42699769 aaaatattttatattgttcgtaatttaaaaacaaaaagtgagtcctcccctcc 42699821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 24253911 - 24253760
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----ttta 157  Q
    ||||||||| |||  ||||||||||||||| ||||| ||| ||||||||||| |||||| |||||| || ||| |||||||||||||||||     ||||    
T  24253911 cttttttaaattacggacattataaaatgagttttagaaagttgaattaacaacatgataaatgattatataacacttcaaaaacacttaatttatttta 24253812  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccc 209  Q
    ||||   ||||||||||| || ||||||||||| ||||||||| | ||||||    
T  24253811 aaaaattattttacattgctcataatttaaaaattaaaagtgaacactcccc 24253760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 27197734 - 27197853
Alignment:
Q  93 tttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaa 187  Q
    |||||| ||||||||||||||| ||||||  |||||||| |||||||| ||| | ||||||||||     |||| | || ||||||||||||||||||||    
T  27197734 tttttagaaaattgaattaacaacatgatagatgatcatataatactttaaatatacttaatttattttaaaaaaatatgttacattgttcgtaatttaa 27197833  T
Q  188 aaaataaaagtgagccctcc 207  Q
    |||||||||||||| |||||    
T  27197834 aaaataaaagtgagtcctcc 27197853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 44412522 - 44412577
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44412522 cattttacattgttcgtaatttaaaaaataaaagtgagtcctcccctcccttcccc 44412577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 36727349 - 36727242
Alignment:
Q  79 acattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacactta---atttaaaaag-acattttacatt 174  Q
    |||||||||||| ||||| | |||||| | |||||| |||||| ||| ||||| ||||||||||||||||||||   |||| ||||| ||||||||||||    
T  36727349 acattataaaataattttaagaaaattaacttaacaacatgataaattatcatataatacttcaaaaacacttatttattttaaaagaacattttacatt 36727250  T
Q  175 gttcgtaa 182  Q
    ||| ||||    
T  36727249 gttagtaa 36727242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 42772112 - 42772072
Alignment:
Q  179 gtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  42772112 gtaatttaaaaaataaaagtgagtcctcccctcccttcccc 42772072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 54985696 - 54985812
Alignment:
Q  11 tttattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatt 110  Q
    |||| |||| ||||||||||   |||||||||| ||| ||| |||||  || | ||||||| |||  ||||||||||| ||||||||| |||||||||||    
T  54985696 tttactaagagtgtgtttggattgagggtttagaaggagagagcttagttttcgtttttaaattacggacattataaattgatttttagaaaattgaatt 54985795  T
Q  111 aacagcatgatcaatga 127  Q
    ||||  ||||| |||||    
T  54985796 aacaatatgataaatga 54985812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 34641151 - 34641206
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||||||||||| |||||| ||||||||||||||||||||    
T  34641151 cattttataatgtccgtaatttaaaaaagaaaagtaagccctcccctcccttcccc 34641206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 55428553 - 55428492
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 139  Q
    ||||||| || |||||||||| ||||||||||||||| | |||| ||||||||| |||||||    
T  55428553 gacattacaagatgatttttagaaaattgaattaacaacgtgataaatgatcatataatact 55428492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 37102155 - 37102243
Alignment:
Q  14 attaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 102  Q
    |||||||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  37102155 attaagggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 37102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 28582684 - 28582725
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||||| | ||||||||||||||||||    
T  28582684 cgtaatttaaaaaagaaaagtaaaccctcccctcccttcccc 28582725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 30200098 - 30200182
Alignment:
Q  18 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 102  Q
    |||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  30200098 agggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 30200182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 1085524 - 1085706
Alignment:
Q  43 ggaggggagggcttacatt-ccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttc 141  Q
    |||||||||| ||||| || |||||||||| |||  ||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||    
T  1085524 ggaggggaggacttacttttccttttttaaattacggacattagaaaatgatttttagaaaattgaactaacagcatgataaatgatcatataatacttc 1085623  T
Q  142 aaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||     |||||||| ||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||    
T  1085624 aaaaacacttaatttattttaaaaaaacattttacatggttcgtaatttaaaaaataaaagtgagtcatctcctcccttcccc 1085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 33643499 - 33643296
Alignment:
Q  20 ggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatg 119  Q
    |||||||||||  |||||||||||||||||||   ||| ||| ||||||||| |||   ||||| |||||||||||||| ||||||||||||| |  |||    
T  33643499 ggtgtgtttggatagagggtttaggaggggagaattta-atttcttttttaaattatgaacattttaaaatgatttttagaaaattgaattaataatatg 33643401  T
Q  120 atcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccct 214  Q
    || ||||||||| |||||||||||||||||||||     |||||||| |||||||||||| |||||||||||||||||||||||||| | |||| |||||    
T  33643400 atgaatgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacatttttcgtaatttaaaaaataaaagtgagtcatcccttccct 33643301  T
Q  215 tcccc 219  Q
    |||||    
T  33643300 tcccc 33643296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 47071288 - 47071079
Alignment:
Q  15 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 114  Q
    ||||||||||||||||    ||||||||||| |||| | || || || ||||||||| |||  ||||||||||||||||||||| |||||| ||||||||    
T  47071288 ttaagggtgtgtttggatgaagggtttaggaagggaagactaacttttcttttttaaattacggacattataaaatgatttttagaaaatttaattaaca 47071189  T
Q  115 gcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccc 209  Q
     |||||| |||||||||  |||| |||||||||||||||     ||| |||| ||||||||||||| |||||||||| ||||||||| ||| |  | |||    
T  47071188 acatgataaatgatcataaaatatttcaaaaacacttaacttattttgaaaaaacattttacattgctcgtaatttacaaaataaaaatgaacaatgccc 47071089  T
Q  210 tcccttcccc 219  Q
    ||||||||||    
T  47071088 tcccttcccc 47071079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 25268472 - 25268313
Alignment:
Q  44 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    |||||||||| |||| |||||||||||| |||  || |||||||||||||||||| |||||| ||| |||| | |||| ||||||||| |||||||||||    
T  25268472 gaggggagggtttactttccttttttaaattacggaaattataaaatgatttttagaaaatttaatcaacaacgtgataaatgatcatataatacttcaa 25268373  T
Q  144 aaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataaaagt 198  Q
    ||||||||||     |||||||| ||||||||||||||||  ||||||||| ||||||||    
T  25268372 aaacacttaatttattttaaaaatacattttacattgttcaaaatttaaaatataaaagt 25268313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 2506728 - 2506576
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----- 157  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||| |||||||||  || || ||||||||| |||||||||||||||||||||||||         
T  2506728 cttttttaaattacagatattataaaataatttttaaaaaatcgaattaacaatataataaatgatcatataatacttcaaaaacacttaatttattttg 2506629  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    |||| |||||||| |||| ||||||||||||| |||||| ||| |||||||||    
T  2506628 aaaaaacattttatattggtcgtaatttaaaagataaaaatgaaccctcccct 2506576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 51303461 - 51303600
Alignment:
Q  85 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt------aaaaagacattttacattgttc 178  Q
    |||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||      ||||| |  |||||||||||||    
T  51303461 taaaatgatttttttaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaaatgttttacattgttc 51303560  T
Q  179 gtaatttaaaaaat-aaaagtgagccctcccctcccttcc 217  Q
    |||||||||||||| |||| ||||||||||| ||||||||    
T  51303561 gtaatttaaaaaataaaaaatgagccctcccttcccttcc 51303600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 40709327 - 40709507
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||| ||||| ||||| || ||||||||| |||   | |||||||||| ||||||| |||||| |||||||   ||||| ||||||||| ||||||||||    
T  40709327 ggagaggaggacttacttttcttttttaaattacgaatattataaaataatttttagaaaattaaattaacgatatgataaatgatcatataatacttca 40709426  T
Q  143 aaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||      |||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  40709427 aaaacacttaatttctttttaaaaaaccttttacattgttcataatttaaaaaataaaagtga-ccctcccctccgttcccc 40709507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 35928001 - 35927842
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----a 158  Q
    ||||||||| ||| |||  ||||||||| ||||| | ||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||    |    
T  35928001 cttttttaaattacagattttataaaataatttt-agaaaattgaattaacaacatgataaatgatcatataatacttcaaaaatacttaatttatttta 35927903  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
     || |   |||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  35927902 gaaaaatatttacattgttcataatttaaaaaataaatgtgagccctcccctccattcccc 35927842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 1344783 - 1344592
Alignment:
Q  17 aagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 116  Q
    |||| |||||||||   |||||||||||||||||    |||  || ||||||||| |||  |||||| |||||||||||||| |||||||||  |||| |    
T  1344783 aaggatgtgtttggatggagggtttaggaggggaaaatttatttttcttttttaaattacggacattgtaaaatgatttttagaaaattgaaccaacaac 1344684  T
Q  117 atgatcaatgatcatgtaatacttcaaaaacacttaattta----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccc 204  Q
    ||||| ||| | ||| || ||| |||||||||||||||||     |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  1344683 atgataaataaacatatattacatcaaaaacacttaattttttttaaaaaacattttgcattgtttgtaatttaaaaaataaaagtgagccc 1344592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 35513006 - 35512909
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatactt 140  Q
    |||||||||||||||| ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||    
T  35513006 ggaggggagggcttacttttattttttaaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 35512909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 40287325 - 40287467
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt--------aaaaagacatttt 169  Q
    |||||| | |||||| ||||| |||||||||||||||  || || |||||| || ||||||||||||||||||||||||        ||| | | |||||    
T  40287325 gacattgtgaaatgagttttagaaaattgaattaacaaaatcataaatgattatataatacttcaaaaacacttaatttatttaaaaaaatatatatttt 40287424  T
Q  170 acattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| ||||||| |||||||||||||||||||| |||||||||    
T  40287425 acatagttcgtagtttaaaaaataaaagtgagctctcccctcc 40287467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 525133 - 525315
Alignment:
Q  39 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 138  Q
    ||||||||||||||  |||| || ||||||||| |||  ||||| ||||||| ||||||| ||| |||||||||||  ||||| |||||| || ||||||    
T  525133 tttaggaggggagga-ttacttttcttttttaaattacggacat-ataaaataatttttagaaa-ttgaattaacaatatgataaatgattatataatac 525229  T
Q  139 ttcaaaaacacttaattt------aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    |||||| | |||||||||      ||||| ||||||||| ||||| |||||||||||| ||||||||| | || || |||||||||    
T  525230 ttcaaacaaacttaatttattttaaaaaaaacattttacgttgtttgtaatttaaaaattaaaagtgaactcttccttcccttccc 525315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 23536839 - 23536904
Alignment:
Q  154 tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||| ||||||||||||| || | ||||||||||||||| ||||||||||||||||||||||    
T  23536839 tttaaaaaaacattttacattgatcattatttaaaaaataaaaatgagccctcccctcccttcccc 23536904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 13386989 - 13387068
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    ||||| |||||| |||||||| ||||||||||||||| |||||| ||||||||| ||||||   ||||||||||||||||    
T  13386989 gacatcataaaacgatttttagaaaattgaattaacaacatgataaatgatcatataatacacaaaaaacacttaattta 13387068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 51303467 - 51303412
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  51303467 cattttacattgttggtaatataaaaaataaaagtgagccctcccctcccctcccc 51303412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 52707803 - 52707691
Alignment:
Q  93 tttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaa 187  Q
    ||||| ||||||| ||| |||| |||||| |||||| || |||||||||||||| || |||||||     |||| ||||||||||||||| ||| |||||    
T  52707803 ttttttaaaaatttaat-aacaacatgataaatgatgatataatacttcaaaaatacataatttatttttaaaaaacattttacattgtttgtagtttaa 52707705  T
Q  188 aaaataaaagtgag 201  Q
    ||||||||||||||    
T  52707704 aaaataaaagtgag 52707691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 20607390 - 20607252
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt---------aaaaagacattt 168  Q
    ||||||||||||||||||||  |||||| ||||||||   ||||  || ||||| ||||||||||||||||||||||||         ||||| ||| ||    
T  20607390 gacattataaaatgattttttgaaaattaaattaaca---tgatatattatcatataatacttcaaaaacacttaatttatttaaaaaaaaaaaaca-tt 20607295  T
Q  169 tacattgttcgtaatttaaaaaataaaagtgagccctcccctccc 213  Q
    ||||||||   ||||||||||||||||||||||||||||| ||||    
T  20607294 tacattgt--ataatttaaaaaataaaagtgagccctcccttccc 20607252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 17622694 - 17622632
Alignment:
Q  95 tttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    |||||||||||||||||| | |||||| | ||||||| ||||||||| |||||||||||||||    
T  17622694 tttaaaaaattgaattaataacatgataagtgatcatataatacttctaaaacacttaattta 17622632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 50079476 - 50079577
Alignment:
Q  100 aaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgttcgtaatttaaaaaataa 194  Q
    |||||| || |||||  ||||| ||||||||| |||||||| ||||||||||||     |||||||| |||||||| |||||||||| |||||| |||||    
T  50079476 aaaatttaactaacaatatgataaatgatcatataatactttaaaaacacttaatttattttaaaaaaacattttatattgttcgtactttaaataataa 50079575  T
Q  195 aa 196  Q
    ||    
T  50079576 aa 50079577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 35512974 - 35513013
Alignment:
Q  180 taatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  35512974 taatttaaaaaataaaagtaagccctcccctcccttcccc 35513013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 2859107 - 2859148
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  2859107 cgtaatttaaaaaataaaagtaaaccctcccctcccttcccc 2859148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 17622615 - 17622575
Alignment:
Q  168 ttacattgttcgtaatttaaaaaataaaagtgagccctccc 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  17622615 ttacattgttcgtagtttaaaaaataaaagtgagtcctccc 17622575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 13387081 - 13387131
Alignment:
Q  157 aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcc 207  Q
    ||||| ||||||| ||||||| |||||||||||||||||| |||| |||||    
T  13387081 aaaaaaacatttttcattgtttgtaatttaaaaaataaaaatgagtcctcc 13387131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 38509983 - 38509922
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||| | | ||| |||||||||||||  |||||||| |||||| |||||||||||    
T  38509983 aaaagacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctcctctcccttcccc 38509922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 44210994 - 44211054
Alignment:
Q  97 taaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    ||||||||| || ||||| |||||| || |||||| |||||||||||  ||||||||||||    
T  44210994 taaaaaattaaaataacaacatgataaacgatcatataatacttcaatcacacttaattta 44211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 31061547 - 31061387
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----a 158  Q
    |||||||| ||| |||||||||||| ||| ||||  ||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||     |    
T  31061547 ttttttaaattacagacattataaagtgactttttgaaaattgaattaacaacatgataaatgatcatataatatttcaaaaacacttaatttattttaa 31061448  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  31061447 aaacacattttacattgttcgtaatttaaaaaataaaagtgagccctcccatcctttcccc 31061387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 15085770 - 15085911
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta------aaaagacattttac 171  Q
    ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||      |||| | ||||||     
T  15085770 gacattataaaatgatttttagaaaattgaattaacaacttgataaatgatcatataatacttcaaaaacacttaatttattttttaaaaaatattttat 15085869  T
Q  172 attgttcgtaatttaaaaaataaaagtgagccctcccctccc 213  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  15085870 attgttcgtaatttaaaaaataaaagcgagccctcccatccc 15085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 45257496 - 45257335
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----- 157  Q
    ||||||||| |||  || |||||||||||||||||  |||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||         
T  45257496 cttttttaaattacggatattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaatttatttta 45257397  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    | || |||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||    
T  45257396 agaaaacattttacattgttcgtaatttataaaataaaagtgagtcctcccttcctttcccc 45257335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 1052811 - 1052971
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt------a 157  Q
    |||||||| |||  || |||||||||| ||||||| ||||||||||||||| |||||| ||||||| | ||||| |||||||||| |||||||      |    
T  1052811 ttttttaaattatcgatattataaaataatttttagaaaattgaattaacaacatgataaatgatcgtataatatttcaaaaacatttaatttatttaaa 1052910  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttccc 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||    
T  1052911 aaaaaacattttacattgttcgtaatttaaaaaataaaagtgagctctcctctcctttccc 1052971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 2381060 - 2381197
Alignment:
Q  81 attataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttacattg 175  Q
    |||||||||||| ||||| ||||||||||| ||| ||||||  ||||| || |||||||||||||||||||||||||     |||| |||||||||||||    
T  2381060 attataaaatgaattttagaaaattgaattgacaacatgattgatgatgatataatacttcaaaaacacttaatttattttaaaaaaacattttacattg 2381159  T
Q  176 ttcgtaatttaaaaaataaaagtgagccctcccctccc 213  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  2381160 ttcgtaatttaaaaaataaaagtgaactctcccctccc 2381197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 45098355 - 45098218
Alignment:
Q  66 ttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaa 160  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||     |||||||    
T  45098355 ttttaaattacagacattataaaatggtttttgaaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaa 45098256  T
Q  161 agacattttacattgttcgtaatttaaaaaataaaagt 198  Q
    | |||||||||||| || ||||| ||||||||||||||    
T  45098255 atacattttacattatttgtaatgtaaaaaataaaagt 45098218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 35325456 - 35325316
Alignment:
Q  65 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt-------a 157  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| |||||||||       |    
T  35325456 tttttaaattaacgacattataaaataatttttaaaaaattgaattaataacatgataaatgatcatataatacttcaaaaatacttaatttattttaaa 35325357  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagt 198  Q
    |||| | |||||||||||||||||||| |||||||||||||    
T  35325356 aaaatatattttacattgttcgtaattaaaaaaataaaagt 35325316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 42296349 - 42296519
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa 153  Q
    ||||| || ||||||||| |||  || |||||||||||| ||||| |||| |||||||||| ||| || ||||||||| ||||| || ||||||||||||    
T  42296349 cttacttttcttttttaaattacggatattataaaatgaattttagaaaaatgaattaacaacataataaatgatcatataataatttaaaaacacttaa 42296448  T
Q  154 tt-----taaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||     |||||| | ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  42296449 ttcattttaaaaaaatattttacatcgttcgtaatttaaaaaataaaagtgaaccctctcctcccttcccc 42296519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 31928121 - 31928265
Alignment:
Q  85 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt----------aaaaagacattttacatt 174  Q
    |||||||||||||  ||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||          ||||| ||||||||||||    
T  31928121 taaaatgatttttttaaaattgaattaataacatgataaatgatcatataatacttcaaaaacacttaatttatttaaaaaaaaaaaaacattttacatt 31928220  T
Q  175 gttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||| |||||||||||| ||||||||||||||||| ||||||||||    
T  31928221 gtttgtaatttaaaaattaaaagtgagccctcccttcccttcccc 31928265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 33265773 - 33265635
Alignment:
Q  85 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----aaaagacattttacattgttcgt 180  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||    |||| |  |||||||||||||||    
T  33265773 taaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaatgttttacattgttcgt 33265674  T
Q  181 aatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||| |||| | || ||||||||||||    
T  33265673 aatttaaaaaataaaaatgagtcatcgcctcccttcccc 33265635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 3094427 - 3094565
Alignment:
Q  82 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacac-----ttaatttaaaaagacattttacattgt 176  Q
    ||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| |||||||||||||||||     ||| |||| ||| ||||||||||| ||    
T  3094427 ttataaaatgattcttagaaaattgaattaacaacatgataaataatcatataatacttcaaaaacacgaaatttattttagaaaaacattttacatagt 3094526  T
Q  177 tcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    | ||||||||||||||||||||||| | |||||||||||    
T  3094527 ttgtaatttaaaaaataaaagtgagtcttcccctccctt 3094565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 34187751 - 34187605
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgta--atacttcaaaaacacttaattta-----aaaagacatttta 170  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| |||||| || ||  |||||||||||||||||||||||     | || |||| |||    
T  34187751 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgattatatataatacttcaaaaacacttaatttattttaataaaacatctta 34187652  T
Q  171 cattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    | |||||||||||||||||| ||||||||| || |||||| ||||||    
T  34187651 cgttgttcgtaatttaaaaattaaaagtgaaccttccccttccttcc 34187605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 1270394 - 1270490
Alignment:
Q  125 tgatcatgtaatacttcaaaaacacttaattta------aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    ||||||| ||| |||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270394 tgatcatataacacttcaaaaacacttaatttatttaaaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 1270490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 36052118 - 36052230
Alignment:
Q  39 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 138  Q
    |||||||||||| | ||||| || || |||||| ||| | |||||||||||||||||||| ||||||||||||||| ||| ||  |||||||| | ||||    
T  36052118 tttaggaggggacgacttacttttctattttaaattacatacattataaaatgatttttagaaaattgaattaacaacatcatacatgatcatatgatac 36052217  T
Q  139 ttcaaaaacactt 151  Q
    |||||||||||||    
T  36052218 ttcaaaaacactt 36052230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 17333936 - 17334028
Alignment:
Q  133 taatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaa-tttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||     |||||||||||||||||||| |||| || |||||||||||||||| |||||||| ||||||||    
T  17333936 taatacttcaaaaacacttaatttattttaaaaagacattttacattgtttgtaacttaaaaaaataaaagtgagtcctccccttccttcccc 17334028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 8554369 - 8554446
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaatt 155  Q
    ||||||||||||| |||||| |||||||||||||||| |||||| ||||||| |  ||||||||||||||||| ||||    
T  8554369 gacattataaaataattttttaaaaattgaattaacatcatgataaatgatcgtacaatacttcaaaaacactcaatt 8554446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 22356093 - 22356016
Alignment:
Q  124 atgatcatgtaatacttcaaaaacacttaat-----ttaaaaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    ||||| || ||||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||||||||||    
T  22356093 atgatgatataatacttcaaaaacacttaatctattttaaaaaaacattttacattgttcgtaatttaaaaaataaaa 22356016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 9313188 - 9313079
Alignment:
Q  51 gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc----atgtaatacttcaaaaa 146  Q
    |||||||| || | ||||||| ||| |||||||||||||||||||||  ||||||||||||||| | |||| |||||||    || | ||||||||||||    
T  9313188 gggcttacttttcctttttaaattacagacattataaaatgatttttcgaaaattgaattaacaacttgataaatgatcgatcatattatacttcaaaaa 9313089  T
Q  147 cacttaattt 156  Q
    ||||||||||    
T  9313088 cacttaattt 9313079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 21502204 - 21502067
Alignment:
Q  81 attataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt-------aaaaagacattttacat 173  Q
    |||||||||| ||||| | ||||||| ||||||| || ||| |||| |||| ||||||||||||||||||||||||       ||||| | |||||| ||    
T  21502204 attataaaataattttaagaaaattgcattaacaacaagataaatggtcatataatacttcaaaaacacttaatttatttttaaaaaaaatattttatat 21502105  T
Q  174 tgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||||||||||| |||||||||  ||| |||||||||||    
T  21502104 tgttcgtaattt-aaaaataaatctgaaccctcccctcc 21502067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 42813828 - 42813726
Alignment:
Q  44 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    ||||||| ||||||  || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| | |||| ||| ||||| |||||||| ||    
T  42813828 gaggggatggcttatttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacctgataaataatcatataatactttaa 42813729  T
Q  144 aaa 146  Q
    |||    
T  42813728 aaa 42813726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 14196819 - 14196878
Alignment:
Q  153 atttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    |||| |||| |||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  14196819 attttaaaaaacattttatagtgttcgtaatttaaaaaagaaaagtaagccctcccctcc 14196878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 23739882 - 23739960
Alignment:
Q  134 aatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcc 207  Q
    ||||||||||||||| ||||||||     |||| ||||||||| || |||||||||||||||||||| || ||||||||    
T  23739882 aatacttcaaaaacatttaatttattttaaaaaaacattttacttttttcgtaatttaaaaaataaatgttagccctcc 23739960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 33265767 - 33265813
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  33265767 cattttacattgttcataatttaaaaaataaaagcgagtcctcccct 33265813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 31795804 - 31795918
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||||| ||||| || | ||||||| |||  |||| ||| ||| | ||||| ||||| | || ||||| |||||| || |||||| ||||||||||    
T  31795804 ggaggggaggacttacttttcgtttttaaattacggacactatgaaaagtttttttaaaaaataaaataacaacatgataaacgatcatataatacttca 31795903  T
Q  143 aaaacacttaattta 157  Q
    |  ||||||||||||    
T  31795904 atcacacttaattta 31795918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 887285 - 887326
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||||| ||| ||||||||||||||||    
T  887285 cgtaatttaaaaaagaaaagtaagcgctcccctcccttcccc 887326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 22356179 - 22356220
Alignment:
Q  178 cgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||| |||| ||| ||||||||||||||||||    
T  22356179 cgtaatttaaaaaagaaaaatgaaccctcccctcccttcccc 22356220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 23748250 - 23748311
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||| | | ||| |||| ||||||||  |||||||| ||||||||||||||||||    
T  23748250 aaaagacatttcatagtgtccgtagtttaaaaatgaaaagtgaaccctcccctcccttcccc 23748311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 14187111 - 14187167
Alignment:
Q  45 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaa 101  Q
    |||||||||||||| || ||||||||| ||| | ||||||||||||| |||| ||||    
T  14187111 aggggagggcttacttttcttttttaaattataaacattataaaatgtttttgaaaa 14187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 16713628 - 16713520
Alignment:
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaattt-----aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccct 210  Q
    |||||| |||||  || ||||||||||||||||| ||||||     ||||| | |||||| ||||| ||||||||||||| ||||| ||| |  |||| |    
T  16713628 catgataaatgaatatataatacttcaaaaacacataatttcttttaaaaaaatattttatattgtacgtaatttaaaaattaaaattgaactatccctt 16713529  T
Q  211 cccttcccc 219  Q
    |||||||||    
T  16713528 cccttcccc 16713520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 22356173 - 22356141
Alignment:
Q  82 ttataaaatgatttttaaaaaattgaattaaca 114  Q
    ||||||||||||||||| |||||||||||||||    
T  22356173 ttataaaatgatttttagaaaattgaattaaca 22356141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 15353537 - 15353392
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacactta---attt-aaaaagacattttacat 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||| |||||| |||||||||||||   |||| ||||| |||||||||||    
T  15353537 gacattataaaatgatttttagaaaattgaattaacaacattataaatgatcatataatacatcaaaaacacttatttatttcaaaaaaacattttacat 15353438  T
Q  174 tgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  15353437 tgttcgtaatttaaaaaataaaagtgagcgctctcctcccttcccc 15353392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 15323399 - 15323253
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----aaaagacattttaca 172  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| |||||| ||| ||||||||||||||     |||| | ||||||||    
T  15323399 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatacatcagaaacacttaatttattttaaaaatatattttaca 15323300  T
Q  173 ttgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  15323299 ttgttcgtaatttaaaaaataaaagtgagcgctctcctcccttcccc 15323253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 10293457 - 10293286
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||| |||||| || |||||| || ||| ||| |||||||||||||||||| |||| |||||| ||| ||| || ||| ||||| ||||||||||    
T  10293457 ggaggggagagcttacttttctttttcaaattacagatattataaaatgatttttagaaaactgaattgacaacatcataaataatcatataatacttca 10293358  T
Q  143 aaaacacttaatttaa---aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 211  Q
    ||||    |||||||    ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  10293357 aaaatcggtaatttattttaaaaatattttacattgttcgtaatttaaaaaataaaagtgagccctcccctc 10293286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 9051590 - 9051748
Alignment:
Q  64 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta-----a 158  Q
    |||||||| |||  || |||||||||||||||||| ||||||||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||     |    
T  9051590 ttttttaaattacggatattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatatgctactttaaaaacacttaatttatttaaa 9051689  T
Q  159 aaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||| | ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  9051690 aaaaatattttacattgttcgtaattt-aaaaataaaagtgag-catcccctcccttcccc 9051748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 26318475 - 26318345
Alignment:
Q  82 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaa-----tttaaaaagacattttacattgt 176  Q
    ||||||||||| ||||| ||||||||||||||| |||||| | ||||||| |||||||||||||||||||||     |||||||| |||||||| ||| |    
T  26318475 ttataaaatgacttttagaaaattgaattaacaacatgataattgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttatatttt 26318376  T
Q  177 tcgtaatttaaaaaataaaagtgagccctcc 207  Q
    |||||||||||||||||||| ||| ||||||    
T  26318375 tcgtaatttaaaaaataaaaatgaaccctcc 26318345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 23091114 - 23091023
Alignment:
Q  133 taatacttcaaaaacacttaattta-----aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    |||||||||||||||||||||||||     |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  23091114 taatacttcaaaaacacttaatttagtttaaaaatacattttagattgttcgtaatttaaaagataaaagtgagccctcccctcccttcccc 23091023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 31799128 - 31798968
Alignment:
Q  45 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaa 144  Q
    ||||||| | |||| || ||||||||| |||  || |||||||||| |||||| |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  31799128 aggggagagtttacttttcttttttaaattacggatattataaaataattttttaaaaattgaattaacaacatgataaatgatcatataatacttcaaa 31799029  T
Q  145 aacacttaattt--------aaaaagacattttacattgttcgtaatttaaaaaataaaag 197  Q
    |||| ||  |||        ||||| ||||||||||||| |||||||||||||||||||||    
T  31799028 aacattttttttattaaaaaaaaaaaacattttacattgctcgtaatttaaaaaataaaag 31798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 4097305 - 4097451
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattt-----------aaaaagacat 166  Q
    |||||||||||||  |||||| ||||||||||||||| |||||| |||||||||  |||||||| ||||||||||||||           ||||| ||||    
T  4097305 gacattataaaatattttttagaaaattgaattaacaacatgataaatgatcatacaatacttccaaaacacttaatttatttttaaaaaaaaaaaacat 4097404  T
Q  167 tttacattgttcgtaatttaaaaaataaaagtgagccctcccctccc 213  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||    
T  4097405 tttacattgttcacaatttaaaaaataaaagtgagtcatcccctccc 4097451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 3841284 - 3841180
Alignment:
Q  54 cttacattccttttttaatttaaagacattataaaatgattttt--aaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacactt 151  Q
    ||||| || ||||||||| |||  ||||||||||||||||||||  | |||||||||||||||  ||||| |||||| || |||||||||||||||||||    
T  3841284 cttacttttcttttttaaattacggacattataaaatgatttttttacaaaattgaattaacaa-atgataaatgatgatataatacttcaaaaacactt 3841186  T
Q  152 aattta 157  Q
    ||||||    
T  3841185 aattta 3841180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 15373669 - 15373739
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaaca 148  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| |||||| |||||||||    
T  15373669 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatacatcaaaaaca 15373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 25468454 - 25468548
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta 157  Q
    ||||||||| |||  ||||||||||||| ||||| | |||||| | |||||| | |||| |||||| || |||||||||||||||||||||||||    
T  25468454 cttttttaaattatggacattataaaataattttaagaaaattaatttaacaacgtgataaatgattatataatacttcaaaaacacttaattta 25468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 34176606 - 34176711
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    |||||||| | ||||| || ||||||||| |||   | |||||||| |||||||||||||||||||||||||  || || ||||||||| ||||| ||||    
T  34176606 ggaggggaagacttacttttcttttttaaattacgaaaattataaattgatttttaaaaaattgaattaacaatataataaatgatcatataatatttca 34176705  T
Q  143 aaaaca 148  Q
    ||||||    
T  34176706 aaaaca 34176711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 15373737 - 15373776
Alignment:
Q  163 acattttacattgttcgtaatttaaaaaataaaagtgagc 202  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15373737 acattttacattgttcgtaatttaaaaaataaaagtgagc 15373776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 34177060 - 34177098
Alignment:
Q  163 acattttacattgttcgtaatttaaaaaataaaagtgag 201  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34177060 acattttacattgttcgtaatttaaaaaataaaagtgag 34177098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 28477116 - 28477076
Alignment:
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaattt 156  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  28477116 catgataaatgatcatgtaatacttcaaaaacacttaattt 28477076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 29693014 - 29692974
Alignment:
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaattt 156  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  29693014 catgataaatgatcatgtaatacttcaaaaacacttaattt 29692974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 5287471 - 5287514
Alignment:
Q  153 atttaaaaagacattttacattgttcgtaatttaaaaaataaaa 196  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  5287471 atttaaaaaaacattttatattgttcgtaatttaaaaaataaaa 5287514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 4097620 - 4097729
Alignment:
Q  116 catgatcaatgatcatgtaatacttcaaaaacacttaattta------aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccc 209  Q
    |||||| || |||||| |||||||||||  ||||||||||||      |||| | || ||| ||||| |||||||||||||| |||||||| |||| |||    
T  4097620 catgataaacgatcatataatacttcaatcacacttaatttattttggaaaaaaaatgttatattgtccgtaatttaaaaaagaaaagtgaacccttccc 4097719  T
Q  210 tcccttcccc 219  Q
    ||||||||||    
T  4097720 tcccttcccc 4097729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 31849265 - 31849319
Alignment:
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
    ||||||||||||| | ||| |||||||||||||  |||||||| |||||||||||    
T  31849265 aaaagacattttatagtgtccgtaatttaaaaatgaaaagtgaaccctcccctcc 31849319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 1467 - 1612
Alignment:
Q  78 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaatttaa------aaagacattttac 171  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||| |||||||| ||||| ||||||||||       ||| |||||||||    
T  1467 gacattatagaatgatttttagaaaattgaattaacaacttgataaatgatcatataatacttaaaaaatacttaatttatttaaagaaaaacattttac 1566  T
Q  172 attgttcgtaatttaaaaaataaaagtgagccctcccctcccttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  1567 attgttcgtaatttaaaaaataaaagtgagccctcccctccattcc 1612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 37572 - 37415
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacacttaattta----- 157  Q
    ||||||||| ||| ||||| ||||| |||||||||| |||| | |||||||| |||||| | ||||||| ||| ||||||||||||||| |||||         
T  37572 cttttttaaattacagacaatataagatgatttttagaaaacttaattaacaacatgataagtgatcatataacacttcaaaaacacttgatttatttta 37473  T
Q  158 aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37472 aaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctccccttcctt 37415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 30843 - 30747
Alignment:
Q  125 tgatcatgtaatacttcaaaaacacttaattta------aaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    ||||||| ||| |||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30843 tgatcatataacacttcaaaaacacttaatttatttaaaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 30747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 53122 - 52932
Alignment:
Q  13 tattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 112  Q
    ||||||||||||||||||   ||||||||||||||  |  |  ||| || ||||||||| |||  | |||||| |||||||||||  ||||||||| |||    
T  53122 tattaagggtgtgtttggatggagggtttaggaggacaatg--tacttttcttttttaaattatgggcattatgaaatgattttttgaaaattgaactaa 53025  T
Q  113 cagcatgatcaatgatcatgtaatacttcaaaaacactta----atttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgag 201  Q
    || |||||| ||||||||| ||||| ||||||||||||||    ||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  53024 caacatgataaatgatcatataatatttcaaaaacacttaatgtatttaaaaaaatattttacattgtttgtaatttaaaaaataaaagtgag 52932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 242425 - 242311
Alignment:
Q  43 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca 142  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||| ||||    
T  242425 ggaggggagggtttacttttcttttttaaattacggacattataaaatgatttttaaaaaattgaattaacgacatgataaatgatgatataataattca 242326  T
Q  143 aaaacacttaattta 157  Q
    |||| |||| |||||    
T  242325 aaaatacttcattta 242311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 242377 - 242432
Alignment:
Q  164 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcccttcccc 219  Q
    ||||||| | ||| |||||||||||||| |||||| | ||||||||||||||||||    
T  242377 cattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccc 242432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 184796 - 184636
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttca-aaaacacttaattt----- 156  Q
    ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| ||||||  || ||||| |||||||||| ||||||||||||||         
T  184796 cttttttaaattatggacattataaaatgatttttttaaaattgaattaacaacatgatatattatcatataatacttcaaaaaacacttaatttattta 184697  T
Q  157 -----aaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 212  Q
         ||||| |||||||| || |||| ||||||||||||||||||||| |||||||||||    
T  184696 aaaaaaaaaaaacattttatatagttcataatttaaaaaataaaagtgaaccctcccctcc 184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 473 - 355
Alignment:
Q  81 attataaaatgatttttaaaaaattgaa-ttaacagcatgatcaatgatcatgtaatacttcaaaaacacttaat------ttaaaaagacattttacat 173  Q
    |||||||||||||||||| |||||| || ||||||||||||| |||||| ||  |||||||||||||||||||||      | ||||| ||||||||| |    
T  473 attataaaatgatttttagaaaattaaaattaacagcatgataaatgataataaaatacttcaaaaacacttaattatttataaaaaaaacattttacgt 374  T
Q  174 tgttcgtaatttaaaaaat 192  Q
    |||||||||| ||||||||    
T  373 tgttcgtaatataaaaaat 355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 17729 - 17640
Alignment:
Q  63 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaaaaacactta 152  Q
    ||||||||| ||| | | |||||||||||||||||  |||||||||||| || |||||| ||| ||||| |||||||||||| |||||||    
T  17729 cttttttaaattacaaatattataaaatgattttttgaaaattgaattagcaacatgataaataatcatataatacttcaaatacactta 17640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 39341 - 39402
Alignment:
Q  154 tttaaaaagacattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 215  Q
    |||| ||| |||| |||||| || |||||||||||||| |||||| | ||||||||||||||    
T  39341 tttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaaccctcccctccctt 39402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 81498 - 81546
Alignment:
Q  95 tttaaaaaattgaattaacagcatgatcaatgatcatgtaatacttcaa 143  Q
    |||||||||||||| ||| | |||||| ||||||||| |||||||||||    
T  81498 tttaaaaaattgaaataataacatgataaatgatcatataatacttcaa 81546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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