View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_46 (Length: 210)
Name: NF13173_high_46
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 17790466 - 17790549
Alignment:
| Q |
27 |
gttcaagccctgtgagtcccgatggatacaaatcaaatccagatgttaattaagtttaaagataaaccatttgacgactcaagt |
110 |
Q |
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| T |
17790466 |
gttcaagccctctgagtcccgatggatacaaatcaaatccagatgttaattaagtttaaagataaaccatttgacgactcaagt |
17790549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 21383759 - 21383726
Alignment:
| Q |
139 |
tttgttaaagagtctcacatcggataaaagatgg |
172 |
Q |
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| T |
21383759 |
tttgttaaggagtctcacatcggataaaagatgg |
21383726 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 24612763 - 24612797
Alignment:
| Q |
141 |
tgttaaagagtctcacatcggataaaagatggtat |
175 |
Q |
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| T |
24612763 |
tgttaaagagtctcacatcggataaaagattgtat |
24612797 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 43536802 - 43536773
Alignment:
| Q |
142 |
gttaaagagtctcacatcggataaaagatg |
171 |
Q |
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| T |
43536802 |
gttaaagagtctcacatcggataaaagatg |
43536773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 6312016 - 6312048
Alignment:
| Q |
141 |
tgttaaagagtctcacatcggataaaagatggt |
173 |
Q |
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| T |
6312016 |
tgttaaagagtctcacatcggacaaaagatggt |
6312048 |
T |
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