View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_high_7 (Length: 646)
Name: NF13173_high_7
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 154 - 631
Target Start/End: Complemental strand, 44145765 - 44145291
Alignment:
| Q |
154 |
tttactttgtagttctctaatcttcatacgagtaagacatgagttaaacaactctgcattttttattcctaggtgcaaaaaagtttaaccatcatatgct |
253 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||| |||||| |
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| T |
44145765 |
tttactttgtagttctctaatcttcatacgtgtaagacatgagttaaacaactctgcattttttattccca--tgctaaaa-gcttaaccatcgtatgct |
44145669 |
T |
|
| Q |
254 |
aagagcatctttaatccctttgaagttcaacaaattaaaagcattcccatttcattttggtttgttagcattgaaaatatgatggaaactactcttgatg |
353 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||| |||||| ||| |||||||||||||||||||||| |
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| T |
44145668 |
aagagcatctttaatccctttgaagttcaacaaattagaaacattcccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatg |
44145569 |
T |
|
| Q |
354 |
cacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagcca |
453 |
Q |
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| T |
44145568 |
cccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagcca |
44145469 |
T |
|
| Q |
454 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactgga |
553 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44145468 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgactgaattaatctagcaagaaagggtgtaaaactgga |
44145369 |
T |
|
| Q |
554 |
aacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgtttt |
631 |
Q |
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| T |
44145368 |
aacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgtttt |
44145291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 94 - 567
Target Start/End: Original strand, 44156147 - 44156610
Alignment:
| Q |
94 |
atgatagtactacttttaattacttatattaattctttttgacttactttattaagggtgtttactttgtagttctctaatcttcatacgagtaagacat |
193 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
44156147 |
atgatagtattacctttaattacttatattaattctctttgacttattttattaagagtgtttactatgtaattctctaatcttcatacgagtaagacat |
44156246 |
T |
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| Q |
194 |
gagttaaacaactctgcattttttattcctaggtgcaaaaaagtttaaccatcatatgctaagagcatctttaatccctttgaagttcaacaaattaaaa |
293 |
Q |
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||||||||||||||||||||||||||||| | ||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44156247 |
gagttaaacaactctgcattttttattccca--tgctaaaa-gcttaaccatcgtatgctaagagcatctttaatccctttgaagttcaacaaattagaa |
44156343 |
T |
|
| Q |
294 |
gcattcccatttcattttggtttgttagcattgaaaatatgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaag |
393 |
Q |
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||||||||||||||| |||| |||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| ||| |
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| T |
44156344 |
acattcccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaag |
44156443 |
T |
|
| Q |
394 |
atgctcctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccaga |
493 |
Q |
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|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44156444 |
atgctctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccaga |
44156543 |
T |
|
| Q |
494 |
catgaatatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaa |
567 |
Q |
| |
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||| ||||| ||||| |||| ||||||||||| |||||||| ||||||| |||||||||| ||||||| |
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| T |
44156544 |
cataaatatattccc-------gaccaaattaatctagaaagaaaggttgtaaaattggaaacactttgtccaa |
44156610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 44146100 - 44145959
Alignment:
| Q |
13 |
aaaataagtcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacttttaa |
112 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44146100 |
aaaagaagtcttaagctaagagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacctttaa |
44146001 |
T |
|
| Q |
113 |
ttacttatattaattctttttgacttactttattaagggtgt |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44146000 |
ttacttatattaattctttttgacttactttattaagggtgt |
44145959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 44155971 - 44156052
Alignment:
| Q |
13 |
aaaataagtcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagataca |
94 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||||| |
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| T |
44155971 |
aaaagaagtcttaagctacgagaattcacaagaaagttggtaaaatcactaaaatggggaatatgaattaaaagtagataca |
44156052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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