View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_1 (Length: 812)
Name: NF13173_low_1
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 19 - 802
Target Start/End: Original strand, 2272119 - 2272905
Alignment:
| Q |
19 |
ggtggggggagggttggggagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggcgaaaaatgtagactatatatgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2272119 |
ggtggggggagggttggggagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggctaaaaatgtagactatatatgc |
2272218 |
T |
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| Q |
119 |
ttcttaaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272219 |
ttcttaaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttga |
2272318 |
T |
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| Q |
219 |
ctatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272319 |
ctatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatc |
2272418 |
T |
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| Q |
319 |
agaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272419 |
agaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaag |
2272518 |
T |
|
| Q |
419 |
aggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatt |
518 |
Q |
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| T |
2272519 |
aggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatt |
2272618 |
T |
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| Q |
519 |
tacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagaca |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2272619 |
tacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagaca |
2272718 |
T |
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| Q |
619 |
aagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctcc |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272719 |
aagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctcc |
2272818 |
T |
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| Q |
719 |
aaatggacattg---ttttgttccatgtattgcttcccatattttgcttcactgtgttaattgatcaatgtggtccatgcacctatg |
802 |
Q |
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| T |
2272819 |
aaatggacattgtttttttgttccatgtattgcttcccatattttgcttcactgtgttaattgatcaatgtggtccatgcacctatg |
2272905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 432 - 506
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
432 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
506 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 356
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
200 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
283 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
284 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
356 |
Q |
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|| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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