View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_12 (Length: 557)
Name: NF13173_low_12
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 35646543 - 35646943
Alignment:
| Q |
18 |
gaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggcaagagatttcacgag |
117 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
35646543 |
gaatttaagtgagttgtgtgctacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggtaagagatttcacaag |
35646642 |
T |
|
| Q |
118 |
tggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646643 |
tggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaagg |
35646742 |
T |
|
| Q |
218 |
cagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaagaccacattagtcgtagatctgatggagatgttgaaaatgaggagcataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35646743 |
cagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacattagtcgtagatctgatggagatgttgagaatgaggagcataa |
35646842 |
T |
|
| Q |
318 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggtatgtaacaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646843 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggtatgtaacaat |
35646942 |
T |
|
| Q |
418 |
a |
418 |
Q |
| |
|
| |
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|
| T |
35646943 |
a |
35646943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 40 - 421
Target Start/End: Original strand, 35655987 - 35656371
Alignment:
| Q |
40 |
acaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggcaagagatttcacgagtggttgttggagtttggagagt |
139 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||| | || |||||| ||| ||||||||| ||||| |||| |
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| T |
35655987 |
acaattactaatgatatagtatgcagggtggctctgggaaaaagataccgtgaaggaagagggatgaaatttcaggaggtgttgttggaatttggggagt |
35656086 |
T |
|
| Q |
140 |
tattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcagaaaaatgtgcaaaaatttt |
239 |
Q |
| |
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| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||| |||| ||||||||| || ||| || |
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| T |
35656087 |
tgctgggtactgtatgtataggagactatataccttggcttgattggttgggaaaagttaatggtttttatagcaaagcagaaaaagtggccaaacaatt |
35656186 |
T |
|
| Q |
240 |
ggatgattttatagaacaagtaattgaagaccacattagtcg---tagatctgatgga---gatgttgaaaatgaggagcataatgattttgtggatgtt |
333 |
Q |
| |
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|||||| ||| | || |||| ||||| || ||||||||| | |||| || ||||| | |||||||||| ||||| | |||||||||||||||| |
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| T |
35656187 |
ggatgaattttttgaggaagtcattgaggagcacattagtggtgatagaactaatggacatggtgttgaaaat---gagcagagtgattttgtggatgtt |
35656283 |
T |
|
| Q |
334 |
ttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggtatgtaacaatatca |
421 |
Q |
| |
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|| ||||| ||||||||||| ||||||| ||||| | ||||||| || | ||||||||||||||||||| ||| |||| ||||||| |
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|
| T |
35656284 |
ttgctttcgcttcaaaagactaatgctatgggcttcccaattgatagaatttcaatcaaggctttgatacttgtaagtaataatatca |
35656371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 35647012 - 35647072
Alignment:
| Q |
487 |
ccttttgttgcatatttattgctctagcatatatggtggattgaatatttgttttcctttg |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35647012 |
ccttttgttgcatatttattgctctagcatatatggtggattgaatatttgttttcctttg |
35647072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 35641617 - 35642004
Alignment:
| Q |
18 |
gaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggcaagagatttcacgag |
117 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| |||| |||||||| || ||||||| ||| ||||| ||||| | ||| | ||| |
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|
| T |
35641617 |
gaatttaacagagttgtgttctacaattactaatgatataacatgtagggtggctctaggaaaaagatatggtgaa---aaaggtggggtattgccggag |
35641713 |
T |
|
| Q |
118 |
tggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaagg |
217 |
Q |
| |
|
| ||||||||||||||||||| || ||| | | | |||||||||||||||||| |||||| | |||||||| || || |||||| | ||| |||||| |
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|
| T |
35641714 |
ctgatgttggagtttggagagttgttgggttcattctttataggagattatataccttggcttaaatggttgggtaaggttaatggtttctatagcaagg |
35641813 |
T |
|
| Q |
218 |
cagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaagaccacat---tagtcgtagatctgatggagatgttgaaaatgaggagca |
314 |
Q |
| |
|
|||||||| || ||| ||||||||| ||| | || |||| ||||| || ||||| | || |||||||||||||| |||||| ||||| |
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|
| T |
35641814 |
cagaaaaagtggctaaacatttggatgaattttttgagaaagttattgaggagcacatcagtggtagtagatctgatggacatgttg---gtgagggaac |
35641910 |
T |
|
| Q |
315 |
taatgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
408 |
Q |
| |
|
| |||||||||||| |||| ||||| |||||||||| ||||| ||||||||| ||||||| ||||||||| |||| |||| |||||||| |
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| T |
35641911 |
cagtgattttgtggacattttgctttcagttcaaaagagcaatgctgctggcttttcaattgatagaactgcaattaagggtttgttactggta |
35642004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 35673637 - 35673773
Alignment:
| Q |
120 |
gttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggca-aggc |
218 |
Q |
| |
|
|||||| |||||||| | ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| ||| ||| |
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|
| T |
35673637 |
gttgttagagtttgggggattattgggtagtgtatgtatgggagattatataccttggcttgattggttgggaaaagttgatcgtttttatagcaggggc |
35673736 |
T |
|
| Q |
219 |
agaaaaatgtgcaaaaattttggatgattttatagaa |
255 |
Q |
| |
|
|||||||||| | ||| ||||||||| ||| ||||| |
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|
| T |
35673737 |
agaaaaatgtacccaaaatttggatgagtttgtagaa |
35673773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 35649054 - 35649157
Alignment:
| Q |
122 |
tgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcaga |
221 |
Q |
| |
|
|||||||||||||||||||||||| || | | | |||||||||||| ||||| | ||| |||||||||| || || |||||| ||||| | |||||||| |
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|
| T |
35649054 |
tgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcaga |
35649153 |
T |
|
| Q |
222 |
aaaa |
225 |
Q |
| |
|
|||| |
|
|
| T |
35649154 |
aaaa |
35649157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 35677134 - 35677237
Alignment:
| Q |
122 |
tgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcaga |
221 |
Q |
| |
|
|||||||||||||||||||||||| || | | | |||||||||||| ||||| | ||| |||||||||| || || |||||| ||||| | |||||||| |
|
|
| T |
35677134 |
tgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcaga |
35677233 |
T |
|
| Q |
222 |
aaaa |
225 |
Q |
| |
|
|||| |
|
|
| T |
35677234 |
aaaa |
35677237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 35677033 - 35677107
Alignment:
| Q |
18 |
gaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtga |
92 |
Q |
| |
|
||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| || || |||| ||||||||| |
|
|
| T |
35677033 |
gaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtga |
35677107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 35649250 - 35649340
Alignment:
| Q |
318 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
408 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||| || | |||| || ||||||| ||||||||| |||| |||| |||||||| |
|
|
| T |
35649250 |
tgattttgtggacgttttgctttcagttcaaaagagcaatgatactagcttctcaattgatagaactgcaattaagggtttgttactggta |
35649340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 35677330 - 35677420
Alignment:
| Q |
318 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
408 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||| || | |||| || ||||||| ||||||||| |||| |||| |||||||| |
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|
| T |
35677330 |
tgattttgtggacgttttgctttcagttcaaaagagcaatgatactagcttctcaattgatagaactgcaattaagggtttgttactggta |
35677420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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