View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_14 (Length: 531)

Name: NF13173_low_14
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_14
NF13173_low_14
[»] chr1 (7 HSPs)
chr1 (13-286)||(11611908-11612181)
chr1 (421-459)||(794955-794993)
chr1 (421-460)||(18808819-18808858)
chr1 (423-460)||(1585901-1585938)
chr1 (421-455)||(7409832-7409866)
chr1 (422-455)||(26653950-26653983)
chr1 (423-455)||(24909519-24909551)
[»] chr4 (7 HSPs)
chr4 (421-460)||(21555421-21555460)
chr4 (421-455)||(23249516-23249550)
chr4 (421-455)||(27733422-27733456)
chr4 (421-455)||(36609422-36609456)
chr4 (421-460)||(827870-827909)
chr4 (421-460)||(12701079-12701118)
chr4 (421-460)||(56100147-56100186)
[»] chr7 (3 HSPs)
chr7 (421-458)||(41326084-41326121)
chr7 (421-460)||(40337075-40337114)
chr7 (421-455)||(8163652-8163686)
[»] scaffold0306 (1 HSPs)
scaffold0306 (421-460)||(13065-13104)
[»] scaffold0302 (1 HSPs)
scaffold0302 (421-460)||(18512-18551)
[»] scaffold0152 (1 HSPs)
scaffold0152 (421-460)||(22223-22262)
[»] chr8 (6 HSPs)
chr8 (421-460)||(4623859-4623898)
chr8 (421-460)||(23403639-23403678)
chr8 (421-460)||(30204657-30204696)
chr8 (421-460)||(36470144-36470183)
chr8 (421-457)||(16656022-16656058)
chr8 (421-450)||(36046538-36046567)
[»] chr3 (8 HSPs)
chr3 (421-460)||(36404231-36404270)
chr3 (421-455)||(47599410-47599444)
chr3 (421-460)||(16353498-16353537)
chr3 (421-460)||(29360523-29360562)
chr3 (421-460)||(35534523-35534562)
chr3 (421-456)||(39392002-39392037)
chr3 (421-460)||(45603025-45603064)
chr3 (421-460)||(46487310-46487349)
[»] chr2 (12 HSPs)
chr2 (421-460)||(30609695-30609734)
chr2 (421-460)||(30757193-30757232)
chr2 (421-455)||(28107497-28107531)
chr2 (421-455)||(37060088-37060122)
chr2 (421-460)||(14786275-14786314)
chr2 (421-460)||(21423406-21423445)
chr2 (421-460)||(27004490-27004529)
chr2 (421-455)||(4382253-4382287)
chr2 (421-455)||(6974526-6974560)
chr2 (421-458)||(24475941-24475978)
chr2 (423-455)||(15070401-15070433)
chr2 (422-454)||(27969534-27969566)
[»] chr5 (5 HSPs)
chr5 (421-454)||(38451048-38451081)
chr5 (421-460)||(3729342-3729381)
chr5 (421-460)||(8159079-8159118)
chr5 (421-460)||(34766893-34766932)
chr5 (421-460)||(39508325-39508364)
[»] scaffold0025 (1 HSPs)
scaffold0025 (421-460)||(67913-67952)
[»] chr6 (3 HSPs)
chr6 (421-460)||(444562-444601)
chr6 (421-460)||(2814899-2814938)
chr6 (421-455)||(6200171-6200205)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 11611908 - 11612181
Alignment:
Q  13 aatatagcataccattcgacaaaagcattgaaatttacgtactgttatatttcatgggaacatacttcagcaccactttccttcctttgcattcattttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11611908 aatatagcataccattcgacaaaagcattgaaatttacgtactgttatatttcatgggaacatacttcagcaccactttccttcctttgcattcattttt 11612007  T
Q  113 gacagaaatggcttttgagaggaaaacctatgcaaacagtgtcttttttgggcattgaaacaccttagagtgattaattaggaatgaattgttggtaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11612008 gacagaaatggcttttgagaggaaaacctatgcaaacagtgtcttttttgggcattgaaacaccttagagtgattaattaggaatgaattgttggtaata 11612107  T
Q  213 atggcgttattgttaaagagtaattttcatgtgttccaacttctactctcctttatcatcagaaactgagaaac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11612108 atggcgttattgttaaagagtaattttcatgtgttccaacttctactctcctttatcatcagaaactgagaaac 11612181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 459
Target Start/End: Complemental strand, 794993 - 794955
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagac 459  Q
    |||||||||||||||||||||||||||||||||||||||    
T  794993 ctaaaacatgtaaaaggataactattgtgagaagaagac 794955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 18808858 - 18808819
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18808858 ctaaaacatataaaaggataactattgtgagaagaagact 18808819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 460
Target Start/End: Complemental strand, 1585938 - 1585901
Alignment:
Q  423 aaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagact 1585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 7409832 - 7409866
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||| ||||||||    
T  7409832 ctaaaacatgtaaaaggataactattatgagaaga 7409866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Original strand, 26653950 - 26653983
Alignment:
Q  422 taaaacatgtaaaaggataactattgtgagaaga 455  Q
    ||||||||||||||||||||| ||||||||||||    
T  26653950 taaaacatgtaaaaggataaccattgtgagaaga 26653983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 455
Target Start/End: Original strand, 24909519 - 24909551
Alignment:
Q  423 aaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||| ||||||||||||||||||||||||||||    
T  24909519 aaaatatgtaaaaggataactattgtgagaaga 24909551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 21555460 - 21555421
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21555460 ctaaaacatgtaaaaggataactattgtgagaagaagact 21555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 23249550 - 23249516
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  23249550 ctaaaacatgtaaaaggataactattgtgagaaga 23249516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 27733456 - 27733422
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  27733456 ctaaaacatgtaaaaggataactattgtgagaaga 27733422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 36609422 - 36609456
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  36609422 ctaaaacatgtaaaaggataactattgtgagaaga 36609456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 827909 - 827870
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  827909 ctaaaacatgtaaaaagataactattgtgagaagaggact 827870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 12701118 - 12701079
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  12701118 ctaaaacatgtaaaagaataactattgtaagaagaagact 12701079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 56100147 - 56100186
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  56100147 ctaaaacatgtaaaaggataactattgcgagaagaggact 56100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 41326121 - 41326084
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaaga 458  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41326121 ctaaaacatgtaaaaggataactattgtgagaagaaga 41326084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 40337075 - 40337114
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  40337075 ctaaaacatgtaaaatgataactattgtgagaagatgact 40337114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 8163652 - 8163686
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    ||||||||||||||| |||||||||||||||||||    
T  8163652 ctaaaacatgtaaaaagataactattgtgagaaga 8163686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 13065 - 13104
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13065 ctaaaacatgtaaaaggataactattgtgagaagaggact 13104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 18512 - 18551
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  18512 ctaaaacatgtaaaaggataactattgtgagaagatgact 18551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 22262 - 22223
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22262 ctaaaacatgtaaaaggataactattgtgagaagaggact 22223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 4623859 - 4623898
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4623859 ctaaaacatgtaaaaggataactattgtgagaagatgact 4623898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 23403678 - 23403639
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23403678 ctaaaacatgtaaaaggataactattgtgagaagaggact 23403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 30204657 - 30204696
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30204657 ctaaaacatgtaaaaggataactattgtgagaagatgact 30204696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 36470144 - 36470183
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36470144 ctaaaacatgtaaaaggataactattgtgagaagatgact 36470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 16656058 - 16656022
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaag 457  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16656058 ctaaaacatgtaaaatgataactattgtgagaagaag 16656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Original strand, 36046538 - 36046567
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtga 450  Q
    ||||||||||||||||||||||||||||||    
T  36046538 ctaaaacatgtaaaaggataactattgtga 36046567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 36404231 - 36404270
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36404231 ctaaaacatgtaaaaggataactattgtgagaagaggact 36404270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 47599444 - 47599410
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  47599444 ctaaaacatgtaaaaggataactattgtgagaaga 47599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 16353498 - 16353537
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  16353498 ctaaaacatgtaaaaggataactattgtgaaaagaggact 16353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 29360562 - 29360523
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  29360562 ctaaaacatgtaaaaggataactactgtgagaagaggact 29360523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 35534562 - 35534523
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  35534562 ctaaaacatataaaatgataactattgtgagaagaagact 35534523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 456
Target Start/End: Complemental strand, 39392037 - 39392002
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaa 456  Q
    |||||||||||||||||||||||||||||| |||||    
T  39392037 ctaaaacatgtaaaaggataactattgtgaaaagaa 39392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 45603064 - 45603025
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  45603064 ctaaaacatgtaaaaggataactattgtgataagatgact 45603025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 46487349 - 46487310
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  46487349 ctaaaacatataaaatgataactattgtgagaagaagact 46487310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 30609695 - 30609734
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30609695 ctaaaacatgtaaaatgataactattgtgagaagaagact 30609734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 30757193 - 30757232
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30757193 ctaaaacatgtaaaaggataactattgtgagaagaggact 30757232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 28107497 - 28107531
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  28107497 ctaaaacatgtaaaaggataactattgtgagaaga 28107531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 37060088 - 37060122
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||||||||||||||||||||||||||||||||    
T  37060088 ctaaaacatgtaaaaggataactattgtgagaaga 37060122  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 14786314 - 14786275
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  14786314 ctaaaacatgtaataggataactattgtgagaagaggact 14786275  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 21423445 - 21423406
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  21423445 ctaaaacatgtaataggataactattgtgagatgaagact 21423406  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 27004529 - 27004490
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  27004529 ctaaaacatataaaaggataactattgtgagaagaggact 27004490  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 4382287 - 4382253
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    ||||||||||||||| |||||||||||||||||||    
T  4382287 ctaaaacatgtaaaatgataactattgtgagaaga 4382253  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 6974526 - 6974560
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    ||||||||||||||| |||||||||||||||||||    
T  6974526 ctaaaacatgtaaaatgataactattgtgagaaga 6974560  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 24475941 - 24475978
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaaga 458  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  24475941 ctaaaacatgtaaaaagataactattgtgataagaaga 24475978  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 455
Target Start/End: Original strand, 15070401 - 15070433
Alignment:
Q  423 aaaacatgtaaaaggataactattgtgagaaga 455  Q
    ||||||| |||||||||||||||||||||||||    
T  15070401 aaaacatataaaaggataactattgtgagaaga 15070433  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 27969566 - 27969534
Alignment:
Q  422 taaaacatgtaaaaggataactattgtgagaag 454  Q
    |||||||| ||||||||||||||||||||||||    
T  27969566 taaaacatataaaaggataactattgtgagaag 27969534  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 454
Target Start/End: Original strand, 38451048 - 38451081
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaag 454  Q
    ||||||||||||||||||||||||||||||||||    
T  38451048 ctaaaacatgtaaaaggataactattgtgagaag 38451081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 3729342 - 3729381
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  3729342 ctaaaacatgtaaaaggataattattgtgagaagaggact 3729381  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 8159079 - 8159118
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  8159079 ctaaaacatgtaaaaggataattattgtgagaagaggact 8159118  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 34766893 - 34766932
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  34766893 ctaaaacatgtaaaagaataactattgtgagaagaggact 34766932  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 39508325 - 39508364
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  39508325 ctaaaacatgtaaaagaataactattgtgagaaaaagact 39508364  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 67952 - 67913
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  67952 ctaaaacatgtaaaaggataactattgttagaagaggact 67913  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 444601 - 444562
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  444601 ctaaaacatgtaataggataactattgtgagaagaggact 444562  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 2814899 - 2814938
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaagaagact 460  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  2814899 ctaaaacatgtaaaatgataactattgtgagaagaggact 2814938  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 6200171 - 6200205
Alignment:
Q  421 ctaaaacatgtaaaaggataactattgtgagaaga 455  Q
    |||||| ||||||||||||||||||||||||||||    
T  6200171 ctaaaatatgtaaaaggataactattgtgagaaga 6200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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