View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_15 (Length: 519)
Name: NF13173_low_15
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 1872017 - 1872488
Alignment:
| Q |
17 |
atttcctatgtataaatgaaaacaacaaagaaaggagagttatacacatattcgatatgactataactaacacaaaatcatgtgtagcatatgtattata |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1872017 |
atttcctatgtataaatgaaaacaacaaagaaaagagagttatactcatattcaatatgactatgactaacacaaaatcatgtgtagcatatgtattata |
1872116 |
T |
|
| Q |
117 |
taatagattatataataggtgattgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcctccattaattttgtgaaaatt |
216 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1872117 |
taatag------------gtg-ttgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcttccattaattttgtgaaaatt |
1872203 |
T |
|
| Q |
217 |
atgctattatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatgaaagtacagtgtggataagaagaggtggggtgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1872204 |
atgctattatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatgaaagtacagtgtggataagaagaggtggggtgtg |
1872303 |
T |
|
| Q |
317 |
ggaaagaatgagagagtgatgaaaagaagggaaatagagattcaatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1872304 |
ggaaagaatgagagagtgatgaaaagaagggaaatagagattcaatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgc |
1872403 |
T |
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| Q |
417 |
gtggattaactgattacttcatcatcaacttgtgttgagttatatatat----ct--tcaacttagactcaattactttttagaa |
495 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
1872404 |
gtggagtaactgattacttcatcatcaacttgtgatgagttatatatattcaacttgttaacttagactcaattactttttagaa |
1872488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 1918046 - 1918316
Alignment:
| Q |
17 |
atttcctatgtataaatg-aaaacaacaaagaaaggagagttatacacatattcgatatgactataactaacacaaaatcatgtgtagcatatgtattat |
115 |
Q |
| |
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|||||||||| ||||||| |||| |||||||||| || ||||||||||||| || |||||||||| |||||| |||| ||| | |||||||||||| |
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| T |
1918046 |
atttcctatgaataaatgcaaaaaaacaaagaaaagaaagttatacacatactcaatatgactatgactaactcaaactcaaa---atcatatgtattat |
1918142 |
T |
|
| Q |
116 |
ataatagattatataataggtgattgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcctccattaattttgtgaaaat |
215 |
Q |
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||||||||| | || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1918143 |
ataatagat--------acgttattgcaattggattttaccaaatcagaatta---gaaggccaattttctcctgactcctccattaattttgtggaaat |
1918231 |
T |
|
| Q |
216 |
tatgctattatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatgaaagtacagtgtggataaga |
302 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
1918232 |
tatgctattatataaagttaattttgtgccaag-aatat-tatgtaagataattgtgtggaagaatgaaagtacagtgtggataaga |
1918316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 17491092 - 17491362
Alignment:
| Q |
17 |
atttcctatgtataaatg-aaaacaacaaagaaaggagagttatacacatattcgatatgactataactaacacaaaatcatgtgtagcatatgtattat |
115 |
Q |
| |
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|||||||||| ||||||| |||| |||||||||| || ||||||||||||| || |||||||||| |||||| |||| ||| | |||||||||||| |
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| T |
17491092 |
atttcctatgaataaatgcaaaaaaacaaagaaaagaaagttatacacatactcaatatgactatgactaactcaaactcaaa---atcatatgtattat |
17491188 |
T |
|
| Q |
116 |
ataatagattatataataggtgattgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcctccattaattttgtgaaaat |
215 |
Q |
| |
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||||||| | | || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17491189 |
ataataggt--------acgttattgcaattggattttaccaaatcagaattat---aaggccaattttctcctgactcctccattaattttgtggaaat |
17491277 |
T |
|
| Q |
216 |
tatgctattatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatgaaagtacagtgtggataaga |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
17491278 |
tatgctattatataaagttaattttgtgccaag-aatat-tatgtaagataattgtgtggaagaatgaaagtacagtgtggataaga |
17491362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 17562122 - 17561852
Alignment:
| Q |
17 |
atttcctatgtataaatg-aaaacaacaaagaaaggagagttatacacatattcgatatgactataactaacacaaaatcatgtgtagcatatgtattat |
115 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||| || ||||||||||||| || |||||||||| |||||| |||| ||| | |||||||||||| |
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| T |
17562122 |
atttcctatgaataaatgcaaaaaaacaaagaaaagaaagttatacacatactcaatatgactatgactaactcaaactcaaa---atcatatgtattat |
17562026 |
T |
|
| Q |
116 |
ataatagattatataataggtgattgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcctccattaattttgtgaaaat |
215 |
Q |
| |
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||||||| | | || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17562025 |
ataataggt--------acgttattgcaattggattttaccaaatcagaattat---aaggccaattttctcctgactcctccattaattttgtggaaat |
17561937 |
T |
|
| Q |
216 |
tatgctattatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatgaaagtacagtgtggataaga |
302 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
17561936 |
tatgctattatataaagttaattttgtgccaag-aatat-tatgtaagataattgtgtggaagaatgaaagtacagtgtggataaga |
17561852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 359 - 474
Target Start/End: Original strand, 17478759 - 17478874
Alignment:
| Q |
359 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggattaactgattacttcatcatcaacttgtgttgagtta |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
17478759 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggagtaactgattacttcatcatcaacttgtgttgagcta |
17478858 |
T |
|
| Q |
459 |
tatatatcttcaactt |
474 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
17478859 |
tatatatcttcaactt |
17478874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 359 - 474
Target Start/End: Original strand, 17483194 - 17483309
Alignment:
| Q |
359 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggattaactgattacttcatcatcaacttgtgttgagtta |
458 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
17483194 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggagtaactgattacttcatcatcaacttgtgttgagcta |
17483293 |
T |
|
| Q |
459 |
tatatatcttcaactt |
474 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
17483294 |
tatatatcttcaactt |
17483309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 17570020 - 17569905
Alignment:
| Q |
359 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggattaactgattacttcatcatcaacttgtgttgagtta |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
17570020 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggagtaactgattacttcatcatcaacttgtgttgagcta |
17569921 |
T |
|
| Q |
459 |
tatatatcttcaactt |
474 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17569920 |
tatatatcttcaactt |
17569905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 17574455 - 17574340
Alignment:
| Q |
359 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggattaactgattacttcatcatcaacttgtgttgagtta |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
17574455 |
caatattggtgttctaaagtgaagggtagctaaggttgtgaggtgagtagtatggtgcgtggagtaactgattacttcatcatcaacttgtgttgagcta |
17574356 |
T |
|
| Q |
459 |
tatatatcttcaactt |
474 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17574355 |
tatatatcttcaactt |
17574340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 46006682 - 46006833
Alignment:
| Q |
123 |
attatataataggtgattgcaattggattttaccaaatcagaatcatgagaaggccaattttctcctgactcctccattaattttgtgaaaattatgcta |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||| |||||||||||||||||||||||| |
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| T |
46006682 |
attaaataataggtgattgcaattggattttaccaaatcagaatca---gaagaccaattaaataag-----ctcgattaattttgtgaaaattatgcta |
46006773 |
T |
|
| Q |
223 |
ttatataaagttaattttgtgccaagaaatatatatgtaaggtaattgtttggaagaatga |
283 |
Q |
| |
|
|| ||||||||| |||||||| |||||||| ||| ||||||||| |||| | ||||||||| |
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|
| T |
46006774 |
ttgtataaagtt-attttgtgtcaagaaatgtatgtgtaaggtagttgtgtcgaagaatga |
46006833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 519
Target Start/End: Complemental strand, 23916153 - 23916121
Alignment:
| Q |
487 |
tttttagaaggataatgtttcatgaacaccctt |
519 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
23916153 |
tttttataaggataatgtttcatgaacaccctt |
23916121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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