View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13173_low_16 (Length: 511)
Name: NF13173_low_16
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 511
Target Start/End: Complemental strand, 25572992 - 25572503
Alignment:
| Q |
20 |
tgatcctttttaatt-atacctatggtgtttacgtnnnnnnncacaaaatggcacaaacctcgagtaggttgaggacactatgtaacctatagaatacaa |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
25572992 |
tgatcctttttaatttatacctatggtgtttacgtaaaaaa-cacaaaatggcacacacctcgagtaggt-gaggacacta-gtaacctatagaatacaa |
25572896 |
T |
|
| Q |
119 |
atccatttatgataacacaacaagacaaaaatgtaataagatgaaagtattga--------------agctaaaaaatgtggttgtgctaccccaaaaca |
204 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25572895 |
atccatttaagttaacacaacaagacaaaaatgtaataagataaaagtattgatgctgaataaacgaagctaaaaaatgtggttgtgctaccccaaaaca |
25572796 |
T |
|
| Q |
205 |
tgaaaataattttttcctgacacgtggtcaattaatgttattgtatctacgtggtctaattatgtctagaaaaaatgtggtagggtaaggtcggagatga |
304 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25572795 |
tgaaa-taattttttcctgacacgtggtcaattaatgttattgtgtctacgtggtctaattatgtctagaaaaaatgtggtagggtaa------------ |
25572709 |
T |
|
| Q |
305 |
aatatagctactgcaccaacttagcaaaatttctcttgatgatgagaacatgaaatctctgtcataataactaaattaaattcatatggtcatccccatc |
404 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25572708 |
-atatagctactgcaccaactaagcaaaatttctcttgatgatgagaacatgaaatctctgtcataataactaaattaaattcatatggtcatccccatc |
25572610 |
T |
|
| Q |
405 |
tcaatcgcattaccttgtgtgtgaaagcttcctctcatttcaactacttatgtttttaaatggtcccaattttcattaaaagatttgatatgcaaattat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25572609 |
tcaatcgcattaccttgtgtgtgaaagcttcctctcatttcaactacttatgtttttaaatggtcccaattttcattataagatttgatatgcaaattat |
25572510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University