View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_17 (Length: 499)
Name: NF13173_low_17
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 41378249 - 41377943
Alignment:
| Q |
25 |
cttgaatcataa-gctaatgcaatgcttcatttgtgtcaattgataataattgatgcagttttttggtgagttcttgtcaactctacacctcttgcccct |
123 |
Q |
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| T |
41378249 |
cttgaatcataaagctaatgcaatgcttcatttgggtcaattgataataattgatgcagttttttggtgagttcttgtcaactctacacctcttgcccct |
41378150 |
T |
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| Q |
124 |
actttatctatttcttataattaaattaagatgttctaagtgaattattttcactgttgtccagaacgatgtcgacctcaactgctggttgccctccttt |
223 |
Q |
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| T |
41378149 |
actttatctatttcttataattaaattaagatgttctaattgaattattttcactgttgtccagaacgaagtcgacctcaactgctggttgccctccttt |
41378050 |
T |
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| Q |
224 |
ttgttttggccttgtagtgtttttgggaccgtgattcactgctgtcaagcaaatcacgcaatcacgcagtcaagttaacatgagccgctggatttaatta |
323 |
Q |
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| T |
41378049 |
ttgttttggccttgtagtgtttttgggaccgtgattcactgctgtcaagcaaatca--------cgcagtcaagttaacatgagccgctggatttaatta |
41377958 |
T |
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| Q |
324 |
acggtttagatttag |
338 |
Q |
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| T |
41377957 |
acggtttagatttag |
41377943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 476
Target Start/End: Complemental strand, 41376155 - 41376055
Alignment:
| Q |
377 |
ttaaatctagtcttcctttcttcttccatgcggtcttgtcaattaa-nnnnnnncagggtttctaaatccagtaaattgattttgtcatatatatccatt |
475 |
Q |
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| T |
41376155 |
ttaaatctagtcttcctttcttcttccatgcggtcttgtcaattaattttttttcagggtttctaaatcctgtaaattgattttgtcatatatatccatt |
41376056 |
T |
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| Q |
476 |
a |
476 |
Q |
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| T |
41376055 |
a |
41376055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 41375434 - 41375491
Alignment:
| Q |
251 |
accgtgattcactgctgtcaagcaaatcacgcaatcacgcagtcaagttaacatgagc |
308 |
Q |
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| T |
41375434 |
accgtgattcattgctgtcaaacaaatcaagcagtcacgtagtcaagttaacatgagc |
41375491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 41375618 - 41375661
Alignment:
| Q |
295 |
aagttaacatgagccgctggatttaattaacggtttagatttag |
338 |
Q |
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| T |
41375618 |
aagttaacatgagccgtcggatttaattaacagtttagatttag |
41375661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 20022048 - 20021991
Alignment:
| Q |
119 |
cccctactttatctatttcttataattaaattaagatgttctaagtgaattattttca |
176 |
Q |
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| T |
20022048 |
cccccactttatctatgccttataattaaatgaagatgttctaaatgaattgttttca |
20021991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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