View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_2 (Length: 798)
Name: NF13173_low_2
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 395 - 782
Target Start/End: Complemental strand, 53763311 - 53762928
Alignment:
| Q |
395 |
aaaatcaatttgtgaagacattaaactcaaagcgccttgaggttttatcggagtataacagtatatagacgctcactcactcttcaggctgtggctggcg |
494 |
Q |
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| T |
53763311 |
aaaatcaatttgtgaagacattaaactcaaagcgccttgaggttttatcggagtataacagtatatagacgctcactca----tcaggctgtggctggcg |
53763216 |
T |
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| Q |
495 |
ttgaatcacaacaagcagtgaaagaaggcagctatcagtggtgtgaccatgtcttcctcctcctcagtccgaccgaatgccgccggtgccgttgactcga |
594 |
Q |
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| T |
53763215 |
ttgaatcacaacaagcagtgaaagaaggcagctatcagtggtgtgaccatgtcttcctcctcctcagtccgaccgaatgccgccggtgccgttgactcga |
53763116 |
T |
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| Q |
595 |
agaagaagctaacnnnnnnngcgaacgcgatgaaacgaaaggacagcttcattcaacttttcgcaatgactggaattcttctcttaagcatgaaatcttt |
694 |
Q |
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| T |
53763115 |
agaagaagctaactttttttgcgaacgcgatgaaacgaaaggacagcttcattcaacttttcgcaatgactggaattcttctcttaagcatgaaatcttt |
53763016 |
T |
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| Q |
695 |
gggacaaaagtaccgaatccatggactccaagaggatactcatgatctgagggaagaacacgattcactcaccgatcgtatgaaaaat |
782 |
Q |
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| T |
53763015 |
gggacaaaagtaccgaatccatggactccaagaggatactcatgatctgagggaagaacacgattcactcaccgatcgtatgaaaaat |
53762928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 53763619 - 53763554
Alignment:
| Q |
17 |
ttgaggtttgtaagagattaacattttaagttgtttttgtcgcatataagtcttcatggtcgcaca |
82 |
Q |
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| T |
53763619 |
ttgaggtttgtaagagattaacattttaagttgttttggtcgcacataagtcttcatggtcacaca |
53763554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 53763583 - 53763548
Alignment:
| Q |
73 |
tggtcgcacataagtcttcatggttacacacaagcc |
108 |
Q |
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| T |
53763583 |
tggtcgcacataagtcttcatggtcacacacaagcc |
53763548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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