View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_23 (Length: 395)
Name: NF13173_low_23
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 154 - 377
Target Start/End: Original strand, 32357096 - 32357316
Alignment:
| Q |
154 |
aatattattaagaagct-gacatgaaagacatgaaagaaaggtgacacccactttccattgtgaaaaagaatatggtaaattaattttgaaagtttaggc |
252 |
Q |
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| T |
32357096 |
aataatattaagaagcttgacatgaaagacattaaagaaaggtgacacccactttccattgtgaaaaagaatatgataaattaatttt-caagtttaggt |
32357194 |
T |
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| Q |
253 |
ctcccccatcgcatacactaacatgtaatggggtccaattcctttttctttaggtacaaccannnnnnnnnnctgtcaataatatccattcatcaatgtt |
352 |
Q |
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| T |
32357195 |
ctccaccattgcacacactaacatgtaatggggtccaattcctttttctttaggtaaaaccatttttttt---tgtcaataatattcattcatcaatgtc |
32357291 |
T |
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| Q |
353 |
atttaacttggtcaaaagaatcaat |
377 |
Q |
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| T |
32357292 |
atttgactttgtaaaaaaaatcaat |
32357316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 45886915 - 45886971
Alignment:
| Q |
17 |
aaaatacccctacgttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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| T |
45886915 |
aaaatacccctgcgctagttaactaacgtaggtataaaattaacatgacttaaaatt |
45886971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 52689508 - 52689574
Alignment:
| Q |
7 |
aaaattgattaaaatacccctacgttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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| T |
52689508 |
aaaactgactaaaatacctttacgttagttaactaacgcaagtataaaattaacatgacttaaaatt |
52689574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 12488467 - 12488510
Alignment:
| Q |
30 |
gttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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| T |
12488467 |
gttagttaactaacgtaagtgtaaaattaacatgacttaaaatt |
12488510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 25995056 - 25995000
Alignment:
| Q |
17 |
aaaatacccctacgttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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||||||| | |||| ||||||||||||| | |||||||||||| |||||||||||| |
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| T |
25995056 |
aaaatactcgtacgctagttaactaacgcaagtgtaaaattaacatgacttaaaatt |
25995000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26092518 - 26092574
Alignment:
| Q |
17 |
aaaatacccctacgttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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||||||||| | || ||||||||||||| | |||||||||||| |||||||||||| |
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| T |
26092518 |
aaaatacccttgcgctagttaactaacgcaagtgtaaaattaacatgacttaaaatt |
26092574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 26093146 - 26093090
Alignment:
| Q |
17 |
aaaatacccctacgttagttaactaacgtatatgtaaaattaacgtgacttaaaatt |
73 |
Q |
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||||||||||| || |||||||| |||| | |||||||||||| |||||||||||| |
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| T |
26093146 |
aaaatacccctgcgctagttaaccaacgcaagtgtaaaattaacatgacttaaaatt |
26093090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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