View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_25 (Length: 368)
Name: NF13173_low_25
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 34593120 - 34592971
Alignment:
| Q |
10 |
attatactagtgtgtacgtattattaatgccattattgtattcaatgctaatgtcattctttcataaatagaaaagtatgacactaatactaaactattt |
109 |
Q |
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| T |
34593120 |
attatactagtgtgtacgtattattaatgccattattgtattcaatgcttatgtcattctttcataaatagaaaagtatgacactaatactaaactattt |
34593021 |
T |
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| Q |
110 |
ttaggtgcatacatctcttctattcacaaacaaataaagcaaagtcaaaa |
159 |
Q |
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| T |
34593020 |
ttaggtgcatacatctcttctattcacaaacaaataaagcaaagacaaaa |
34592971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 206 - 351
Target Start/End: Complemental strand, 34592915 - 34592770
Alignment:
| Q |
206 |
atgttctcaagaaaattttcttaatatagatagatgtgtatgttgtaggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaata |
305 |
Q |
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| T |
34592915 |
atgttctcaagaaaattttcttaatatagatagatgtgtatgttgtaggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaata |
34592816 |
T |
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| Q |
306 |
ggagctcatcaaaggcaacggtaactgcatcttggtcggatatagg |
351 |
Q |
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| T |
34592815 |
ggagctcatcaaatgcaacggtaattgcatcctggtctgaaatagg |
34592770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 34592959 - 34592927
Alignment:
| Q |
150 |
aaagtcaaaattgattgtattcatatatatcct |
182 |
Q |
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| T |
34592959 |
aaagtcaaaattgattgtattcatatatatcct |
34592927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 351
Target Start/End: Complemental strand, 34577373 - 34577274
Alignment:
| Q |
252 |
aggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatcttggtcggatatagg |
351 |
Q |
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| T |
34577373 |
aggtatgggcaggtccccttagtaaaaacaaagtagcagtggtcttatggaatagaagttcatcaaatgcaacagttactgcgtcttggtctgacatagg |
34577274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 32600073 - 32599972
Alignment:
| Q |
251 |
taggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatcttggtcggatatag |
350 |
Q |
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| T |
32600073 |
taggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttggtcagacatag |
32599974 |
T |
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| Q |
351 |
gt |
352 |
Q |
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|| |
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| T |
32599973 |
gt |
32599972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 32589625 - 32589535
Alignment:
| Q |
251 |
taggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatcttggt |
341 |
Q |
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| T |
32589625 |
taggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttggt |
32589535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 24884315 - 24884405
Alignment:
| Q |
252 |
aggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaaggcaacggtaactgcatcttggtc |
342 |
Q |
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| T |
24884315 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttggtc |
24884405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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