View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13173_low_26 (Length: 366)

Name: NF13173_low_26
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13173_low_26
NF13173_low_26
[»] chr8 (18 HSPs)
chr8 (10-348)||(6351499-6351837)
chr8 (2-102)||(7470970-7471070)
chr8 (2-102)||(7458568-7458668)
chr8 (16-102)||(6362678-6362764)
chr8 (236-344)||(6390142-6390251)
chr8 (236-344)||(6409394-6409503)
chr8 (254-348)||(7458240-7458334)
chr8 (258-346)||(6423418-6423506)
chr8 (166-218)||(7458339-7458391)
chr8 (254-344)||(6331055-6331145)
chr8 (254-348)||(7470642-7470736)
chr8 (16-93)||(6423598-6423675)
chr8 (166-218)||(7470741-7470793)
chr8 (19-102)||(6390475-6390558)
chr8 (19-102)||(6409680-6409763)
chr8 (251-344)||(6287965-6288058)
chr8 (254-344)||(6273714-6273804)
chr8 (19-84)||(6369544-6369609)
[»] chr4 (1 HSPs)
chr4 (181-221)||(52451787-52451827)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 6351837 - 6351499
Alignment:
Q  10 attattctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttacatctttgg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6351837 attatgctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttacatctttgg 6351738  T
Q  110 tctgtcaattttttatcaacaaactctaactaataatttctgttatacgggcttaaatctcctctaaaacagttgtaaaatgatcattaaaatcacttta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6351737 tctgtcaattttttatcaacaaactctaactaataatttctgttatacgggcttaaatctcctctaaaacagttgtaaaatgatcattaaaatcacttta 6351638  T
Q  210 attaataataactccatagaacatattttttgtatgttaatatttcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6351637 attaataataactccatagaacatattttttgtatgttaatatttcttccttgcttgttatttagaggagtagctgttgaggatccagcctctcctaccg 6351538  T
Q  310 gtctccgccttctgatagaggattatccttatgcttctg 348  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6351537 gtctccgccttctgatagaggattatccttatgcttctg 6351499  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 7471070 - 7470970
Alignment:
Q  2 gtgggtagattattctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttac 101  Q
    ||||| ||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  7471070 gtggggagattatgctgtcgaaatgtctgctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggtaaccttac 7470971  T
Q  102 a 102  Q
    |    
T  7470970 a 7470970  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 7458668 - 7458568
Alignment:
Q  2 gtgggtagattattctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttac 101  Q
    ||||| ||||||| || | |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||||    
T  7458668 gtggggagattatgctgttgaaatgtctgctgttgtttacaaggattggaatttcaccgagcaaggacttcctaatgatctaatcaaaaggtaaccttac 7458569  T
Q  102 a 102  Q
    |    
T  7458568 a 7458568  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 6362764 - 6362678
Alignment:
Q  16 ctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttaca 102  Q
    |||||||||||||| |||| |||||||||||||||  ||||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  6362764 ctttggaaatgtcttctgtcgtttacaaggattgggttttcactgagcaaggcctacctaatgatctaatcaaaaggtaaccttaca 6362678  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 6390251 - 6390142
Alignment:
Q  236 tttttgtatgttaatatt-tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggatta 334  Q
    |||||||||||||||||| ||||||||||||||||| |||||| || |||||| ||||||||   ||||||   ||||| || |||||||||||||||||    
T  6390251 tttttgtatgttaatattatcttccttgcttgttatctagaggtgtggctgttaaggatccaaaatctccacatggtctgcgtcttctgatagaggatta 6390152  T
Q  335 tccttatgct 344  Q
    ||| ||||||    
T  6390151 tccatatgct 6390142  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 6409503 - 6409394
Alignment:
Q  236 tttttgtatgttaatatt-tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggatta 334  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| |||||| ||||||||   | ||||   ||| | |||||| |||||||||||||    
T  6409503 tttttgtatgttaatatcatcttccttgcttgttatctagaggagtggctgttaaggatccaaaatttccacatggtgttcgccttttgatagaggatta 6409404  T
Q  335 tccttatgct 344  Q
    ||||||||||    
T  6409403 tccttatgct 6409394  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 7458334 - 7458240
Alignment:
Q  254 tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgcttctg 348  Q
    |||||||||| ||||| |||||||||| || ||| |||||||||| ||||||   ||| | || |||||||||||||| ||||||||||||||||    
T  7458334 tcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccttatgcttctg 7458240  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 6423506 - 6423418
Alignment:
Q  258 ccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgcttc 346  Q
    |||||||||||||  |||||||| ||||||||||||||||| || |||  |||  | |||||| |||| ||||||||||||||||||||    
T  6423506 ccttgcttgttatgcagaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgaggattatccttatgcttc 6423418  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 7458391 - 7458339
Alignment:
Q  166 atctcctctaaaacagttgtaaaatgatcattaaaatcactttaattaataat 218  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  7458391 atctcctctaaaacagttgtaaaatgatcattagtatcactttaagtaataat 7458339  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 6331145 - 6331055
Alignment:
Q  254 tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgct 344  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| | || |||   ||  | ||||||||||||||||| || |||||||||    
T  6331145 tcttccttgcttgttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgct 6331055  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 7470736 - 7470642
Alignment:
Q  254 tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgcttctg 348  Q
    |||||||||| ||||| |||||||||| || ||| |||||||||| ||||||   ||| | || |||||||||||||| |||||||||| |||||    
T  7470736 tcttccttgcatgttaattagaggagtggcagttcaggatccagcttctccacatggtgttcgacttctgatagaggactatccttatgtttctg 7470642  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 6423675 - 6423598
Alignment:
Q  16 ctttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggt 93  Q
    |||||||||||||||||||||  || | |||||||  ||||| ||||||||| |||||||| |||||| |||||||||    
T  6423675 ctttggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctacctaatgatctactcaaaaggt 6423598  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 7470793 - 7470741
Alignment:
Q  166 atctcctctaaaacagttgtaaaatgatcattaaaatcactttaattaataat 218  Q
    |||| ||||||||||||||||||||||||||||  |||||||||| |||||||    
T  7470793 atcttctctaaaacagttgtaaaatgatcattagtatcactttaaataataat 7470741  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 6390558 - 6390475
Alignment:
Q  19 tggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttaca 102  Q
    ||||| ||||| |||  |||||||||||||||  ||||   || |||||||||||||| |||||||||||||||| ||||||||    
T  6390558 tggaattgtcttctgaagtttacaaggattgggttttccaagatcaaggactacctaatgatctaatcaaaaggtgaccttaca 6390475  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 6409763 - 6409680
Alignment:
Q  19 tggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggtaaccttaca 102  Q
    ||||| ||||| ||| ||||||||||||||||  ||||   || |||| ||||||||| |||||||||||||||||| ||||||    
T  6409763 tggaattgtcttctgatgtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggtaagcttaca 6409680  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 6288058 - 6287965
Alignment:
Q  251 atttcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgct 344  Q
    |||| |||||| |||||||  ||||||||| ||||||||||||||| | || |||  ||| || |||||||||||| | ||||| |||||||||    
T  6288058 attttttcctttcttgttacctagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgct 6287965  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 6273804 - 6273714
Alignment:
Q  254 tcttccttgcttgttatttagaggagtagctgttgaggatccagcctctccaaccggtctccgccttctgatagaggattatccttatgct 344  Q
    ||||||||  ||||||| ||||||||| |||||| ||||||||   || |||  ||| || ||||||||||||||||| || |||||||||    
T  6273804 tcttccttttttgttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgct 6273714  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 6369609 - 6369544
Alignment:
Q  19 tggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaa 84  Q
    |||||||||| |||||||||||||||||||||  ||||  |||  ||||||||||||  |||||||    
T  6369609 tggaaatgtcagctgttgtttacaaggattgggttttcgctgaagaaggactacctactgatctaa 6369544  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 52451827 - 52451787
Alignment:
Q  181 gttgtaaaatgatcattaaaatcactttaattaataataac 221  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  52451827 gttgtaaaatgatcattagtatcattttaattaataataac 52451787  T

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