View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13173_low_27 (Length: 361)
Name: NF13173_low_27
Description: NF13173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13173_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 48960694 - 48961044
Alignment:
| Q |
1 |
gcacctgcacctgaaccacgccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcagactcaacctcaagaaaaga |
100 |
Q |
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| T |
48960694 |
gcacctgcacctgaaccacgccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcaaactcaacctcaagaaaaga |
48960793 |
T |
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| Q |
101 |
aaacagaacaaacattttcatctccacctcataggggcttgtttcctaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacaca |
200 |
Q |
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| T |
48960794 |
aaacagaacaaacactttcatctccacctcataggggcttgtttcccaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacaca |
48960893 |
T |
|
| Q |
201 |
atattcaagtagttcttccccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960894 |
atattcaagtagttcttccccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagc |
48960993 |
T |
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| Q |
301 |
ccaatgcattcgccaaatgccagatccactaattcaccaccctctcctttg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48960994 |
ccaatgcattcgccaaatgccagatccactaattcaccaccatctcctttg |
48961044 |
T |
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